Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120862.seq
         (632 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             26   0.35 
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    24   1.1  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    24   1.4  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    24   1.4  
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    23   3.3  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   7.5  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   7.5  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 25.8 bits (54), Expect = 0.35
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +3

Query: 114  LQQRARVRAAYDARQQNGHEPQQQHKLGSDRTVQQEQRTDARRR 245
            LQ++ R  A    +QQ   + QQQ +    +  QQ+Q+  AR R
Sbjct: 1198 LQEQQRNAAMVQQQQQQQQQQQQQQQ--QQQQQQQQQQHQARER 1239



 Score = 25.0 bits (52), Expect = 0.61
 Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
 Frame = +3

Query: 93   HIHQRANLQQRARVRAAYDARQ--QNGHEPQQQHKLGSDRTVQQEQRTDARRRRIY 254
            H  Q+   QQ  + +     +Q  Q   +PQQQ      +  QQ+Q+   ++++ Y
Sbjct: 1495 HSSQKTQQQQPQQQQQQQQQQQPQQQSQQPQQQQPQPQQQQQQQQQQQPQQQQKEY 1550



 Score = 24.2 bits (50), Expect = 1.1
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +3

Query: 93  HIHQRANLQQRARVRAAYDARQQNGHEPQQQHKLGSDRTVQQEQR 227
           H HQ  + Q +A+ +     +QQ    PQQQ +    +  QQ+QR
Sbjct: 815 HHHQSTHPQAQAQAQPQQQQQQQQQQ-PQQQQQ--QQQQQQQQQR 856



 Score = 23.8 bits (49), Expect = 1.4
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = +3

Query: 99  HQRANLQQRARVRAAYDARQQNGHEPQQQHKLGSDRTVQQEQR 227
           HQ+ +  Q    +A   A+ Q   + QQQ      +  QQ+Q+
Sbjct: 811 HQQLHHHQSTHPQAQAQAQPQQQQQQQQQQPQQQQQQQQQQQQ 853


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 11/42 (26%), Positives = 23/42 (54%)
 Frame = +3

Query: 102 QRANLQQRARVRAAYDARQQNGHEPQQQHKLGSDRTVQQEQR 227
           Q+ + QQ+ + +   +A+Q    + QQQ +    +  QQ+Q+
Sbjct: 421 QQQHQQQQQQTQHVINAQQPQQQQQQQQQQQQQQQQQQQQQQ 462



 Score = 23.0 bits (47), Expect = 2.5
 Identities = 12/52 (23%), Positives = 26/52 (50%)
 Frame = +3

Query: 102 QRANLQQRARVRAAYDARQQNGHEPQQQHKLGSDRTVQQEQRTDARRRRIYW 257
           Q+   QQ+ + +        N  +PQQQ +    +  QQ+Q+   ++++ +W
Sbjct: 416 QQMQAQQQHQQQQQQTQHVINAQQPQQQQQ---QQQQQQQQQQQQQQQQQHW 464


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = +1

Query: 115 YNNAPGYVPPTTRDNKMDTSRSNSTNSVAIAPYNKSKE 228
           Y + P Y+   T+D  ++ S    +N+V  A   K+ E
Sbjct: 454 YKSYPNYIDKETKDMNLEISTRPKSNTVENACVLKNTE 491


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +1

Query: 124 APGYVPPTTRDNKMD 168
           +PGYV P T+  K+D
Sbjct: 113 SPGYVQPPTKHQKLD 127


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 10/38 (26%), Positives = 20/38 (52%)
 Frame = +3

Query: 114 LQQRARVRAAYDARQQNGHEPQQQHKLGSDRTVQQEQR 227
           +++R R +  +  R  +  + QQQ +   D+  QQ+ R
Sbjct: 72  MREREREQREHSDRVTSQQQQQQQQQQQQDQQQQQQSR 109


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = -3

Query: 504  SNRSAGTRPRCLVPTLFATESGGVSWSPPIQ 412
            + + A   P  +   + ++ES  VSW PP Q
Sbjct: 1175 TEQDAPEAPIAIKALVMSSESILVSWRPPSQ 1205


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +3

Query: 147 DARQQNGHEPQQQHKL 194
           DAR++ G  P+QQ +L
Sbjct: 171 DARKKKGPTPRQQEEL 186


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,905
Number of Sequences: 438
Number of extensions: 3413
Number of successful extensions: 20
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18949215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)