Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120860.seq
         (628 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2 prot...    24   0.91 
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    23   1.6  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    23   2.8  
AM292352-1|CAL23164.1|  250|Tribolium castaneum gustatory recept...    21   8.4  

>AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2
           protein.
          Length = 377

 Score = 24.2 bits (50), Expect = 0.91
 Identities = 12/37 (32%), Positives = 16/37 (43%)
 Frame = +1

Query: 103 WTYPWKIRHSN*EDILRALAPRFQKKNHLRALRMICI 213
           W YP      N   +LR +   FQ K HL  + +  I
Sbjct: 145 WEYPEAKDKENFITLLREIKEAFQPKGHLLTIAVSAI 181


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = -1

Query: 265 DIRLLGSLKQASQTPTILCRSSSMPLGDF 179
           DI++LG  + + Q   +LC +   P   F
Sbjct: 236 DIKVLGYQRHSKQNVALLCPAQGFPSPSF 264


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +1

Query: 298 GFYTIRKRRKPY 333
           G  T+RK+RKPY
Sbjct: 239 GQVTVRKKRKPY 250


>AM292352-1|CAL23164.1|  250|Tribolium castaneum gustatory receptor
           candidate 31 protein.
          Length = 250

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -3

Query: 269 LRYPITRLFETSITNPNDLMQIIL 198
           LRY   RL++ S+   N++  II+
Sbjct: 144 LRYEHYRLYQLSVLIDNNMSYIII 167


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,806
Number of Sequences: 336
Number of extensions: 2771
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16083914
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)