Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120860.seq
         (628 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces pomb...    28   0.96 
SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|c...    28   1.3  
SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr 1||...    26   5.1  
SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces...    25   6.8  
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos...    25   6.8  
SPBC25H2.16c |||adaptin|Schizosaccharomyces pombe|chr 2|||Manual       25   9.0  
SPAC17A5.05c |||conserved fungal protein|Schizosaccharomyces pom...    25   9.0  
SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|c...    25   9.0  

>SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 730

 Score = 28.3 bits (60), Expect = 0.96
 Identities = 20/77 (25%), Positives = 31/77 (40%), Gaps = 2/77 (2%)
 Frame = +3

Query: 45  INKRIQFEKGIKMQGPAVFMDISLEDQALELRRYFKSLGAEISEEKSPKGIEDDLHKIVG 224
           +N R      I    P      +  D AL L    K     +  +  P G   D   ++G
Sbjct: 124 LNARQTLIADIMSTSPLCITSDTRFDDALLLMIEHKFRHLPVVSDGGPDGSAGDEGDVIG 183

Query: 225 VCD--ACFKEPSNRISK 269
           + +  AC +EP NRI++
Sbjct: 184 IINMRACLREPLNRIAR 200


>SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 649

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 10/27 (37%), Positives = 20/27 (74%)
 Frame = +2

Query: 407 RLYNNLEPNSPLRYHVYYHVIELAARV 487
           RLY+ +   + +R++V Y+V+E+A R+
Sbjct: 246 RLYHIIRAQASIRFYVLYNVLEIADRL 272


>SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1116

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 15/65 (23%), Positives = 34/65 (52%)
 Frame = +1

Query: 391 SAIVMETLQQLRTQLPSKIPCILSCHRTGCTSWICQGSLPGVEQLRKEFANCPPSNEQMA 570
           ++I+ +  + +  +  SK P  +S H+   TS++ +  +PG  + + +  +CP SN    
Sbjct: 200 TSIINDDSRNINKKTLSKQP--VSEHKEKQTSFLRRFRVPGFSRDKDKTKDCPSSNSNPF 257

Query: 571 EIVSA 585
            + S+
Sbjct: 258 HLASS 262


>SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 567

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = +3

Query: 60  QFEKGIKMQGPAVFMDISLEDQALELRRYFKSLGAEISEEKSPKGIEDD 206
           +  +GIK +G ++  +I+ +DQA     YF S   E  E  +    E D
Sbjct: 461 RISEGIKEEGISLSEEITDKDQAFASMGYFDSYNFEGVENSNSLNNEGD 509


>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1649

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +1

Query: 145 ILRALAPRFQKKNHLRALRMICIRSLGFVMLVSKSRVIGY 264
           ILR LAP F +KN L+ L  + IR       VS   ++ +
Sbjct: 97  ILRLLAPFFTEKNALKVLEWL-IRRFSIHEYVSDEFILSF 135


>SPBC25H2.16c |||adaptin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 533

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -1

Query: 295 NRDNTVQNGFDIRLLGSLKQASQTPTILCRSSSMPLGDFSSE 170
           N  NT Q+  D+ +   +   +Q+P++   SS MP   F+ E
Sbjct: 338 NASNT-QSAMDLLIDLDIGSDAQSPSLPASSSQMPTSSFNME 378


>SPAC17A5.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 247

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +2

Query: 461 HVIELAARVGFVREVFLELSSLGKSL 538
           HVI+LA   G V E  +E   LG+ L
Sbjct: 67  HVIDLACGSGEVSETVIEWEHLGREL 92


>SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1111

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +2

Query: 92  SCVYGHIPGRSGTRTEKIF*EPWRRDFRR 178
           S VYG +PG    + E++  E W   FR+
Sbjct: 636 SDVYGKVPGALNIKPEQMTPEVWDHVFRQ 664


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,501,235
Number of Sequences: 5004
Number of extensions: 49304
Number of successful extensions: 139
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)