Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120860.seq
(628 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_55495| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.007
SB_31126| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.0
SB_35128| Best HMM Match : Vicilin_N (HMM E-Value=9.8) 29 4.1
SB_28657| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_5871| Best HMM Match : IBR (HMM E-Value=0.00018) 28 5.4
SB_39812| Best HMM Match : 7tm_1 (HMM E-Value=1.3e-09) 28 7.1
SB_59428| Best HMM Match : Ank (HMM E-Value=2.2) 28 7.1
SB_53344| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_33129| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_28895| Best HMM Match : p450 (HMM E-Value=0) 27 9.4
>SB_55495| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 858
Score = 37.9 bits (84), Expect = 0.007
Identities = 20/58 (34%), Positives = 35/58 (60%)
Frame = +3
Query: 123 QALELRRYFKSLGAEISEEKSPKGIEDDLHKIVGVCDACFKEPSNRISKPF*TVLSLL 296
+A E+R + K GA++ EE S ++D+L +I+ C CFKE + + ++LSL+
Sbjct: 49 KAQEIRTFLKEQGADLKEE-SITPLQDELAEILECCQVCFKEDA-ELESVMNSILSLV 104
>SB_31126| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 104
Score = 30.7 bits (66), Expect = 1.0
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = -3
Query: 290 RQYCSEWLRYPITRLFETSITNPNDLMQIILN 195
R C EW +Y + +L E + + PN ++ + N
Sbjct: 68 RHVCKEWYKYELDKLMEKTSSYPNTILCAVFN 99
>SB_35128| Best HMM Match : Vicilin_N (HMM E-Value=9.8)
Length = 186
Score = 28.7 bits (61), Expect = 4.1
Identities = 9/32 (28%), Positives = 18/32 (56%)
Frame = -3
Query: 290 RQYCSEWLRYPITRLFETSITNPNDLMQIILN 195
R C EW +Y + + E + + N +++ +LN
Sbjct: 150 RHVCKEWYKYELDKFMEKTSSYHNTILRAVLN 181
>SB_28657| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3296
Score = 28.7 bits (61), Expect = 4.1
Identities = 21/103 (20%), Positives = 47/103 (45%)
Frame = +2
Query: 311 LERGENLILAFSQRLTKAPGPKLGMVALQSLWRLYNNLEPNSPLRYHVYYHVIELAARVG 490
+E G ++ +++++ G + + + L L + P+R H+ H++ R+G
Sbjct: 1600 MEDGNTMLTHWTKKIIVEEGHTVAQL-VHMLQLLVRHYRVYYPVRIHLIQHMVSAMQRLG 1658
Query: 491 FVREVFLELSSLGKSLLTAHLLMNKWQKLYRLLHQVLKDQNSE 619
F ++ L L A +++ KW+ L R+ + K Q +
Sbjct: 1659 FTASATIDHRKLAVDL--AEVII-KWE-LQRIKSEQEKQQQQQ 1697
>SB_5871| Best HMM Match : IBR (HMM E-Value=0.00018)
Length = 843
Score = 28.3 bits (60), Expect = 5.4
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +1
Query: 427 TQLPSKIPCILSCHRTGCTSWICQGSLPGVEQLRKEFANCP 549
T P +IP IL C T CT I + +++L+ + CP
Sbjct: 339 TGYPQRIPRILDCSHTFCTECIMK-----IKELQGDVVECP 374
>SB_39812| Best HMM Match : 7tm_1 (HMM E-Value=1.3e-09)
Length = 302
Score = 27.9 bits (59), Expect = 7.1
Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Frame = +2
Query: 323 ENLILAFSQRLTKAPGPKLGMVALQSLWRLYNNLEPNSPLRYHVYYH--VIELAARVGFV 496
E I+ T PG L +V L S+WR + P L +++ + L A+ F+
Sbjct: 14 EFAIIVLLNGWTILPGVLLNVVVLYSIWRTPSLHTPAMVLLFNLALSDLTVALLAQPVFI 73
Query: 497 REVFLELS 520
F+ELS
Sbjct: 74 HWAFIELS 81
>SB_59428| Best HMM Match : Ank (HMM E-Value=2.2)
Length = 351
Score = 27.9 bits (59), Expect = 7.1
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +2
Query: 428 PNSPLRYHVYYHVIE 472
P+ PL YH +YHVI+
Sbjct: 288 PDDPLDYHFFYHVID 302
>SB_53344| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1554
Score = 27.5 bits (58), Expect = 9.4
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Frame = +1
Query: 394 AIVMETLQQLRTQLPSKIPCILSCHRTGCTSWICQGS--LPGVEQLRKEFANC 546
A++ + +R QL ++ IL+C+R C S G LP +L + NC
Sbjct: 1177 AVLTTAPKDIREQLVNQCAQILACYRRNCASPSSAGQLILPECMKLLPLYINC 1229
>SB_33129| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 130
Score = 27.5 bits (58), Expect = 9.4
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = -1
Query: 310 WYRNHNRDNTVQNGFDIRLLGSLKQASQTP 221
WY R N V+NGFDI +L +A P
Sbjct: 72 WY-GRRRQNCVRNGFDITVLTRYSEAVTHP 100
>SB_28895| Best HMM Match : p450 (HMM E-Value=0)
Length = 492
Score = 27.5 bits (58), Expect = 9.4
Identities = 15/31 (48%), Positives = 21/31 (67%)
Frame = +3
Query: 135 LRRYFKSLGAEISEEKSPKGIEDDLHKIVGV 227
LR+YF SLG I++E + +ED L+ VGV
Sbjct: 134 LRKYFPSLGDTIAKELAK--LEDKLNSDVGV 162
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,309,378
Number of Sequences: 59808
Number of extensions: 353174
Number of successful extensions: 952
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 919
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 951
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1560464625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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