Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120860.seq
         (628 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97189-4|AAC48167.3| 2322|Caenorhabditis elegans Suppressor with...    31   0.51 
U97189-3|AAT68901.1| 2019|Caenorhabditis elegans Suppressor with...    31   0.51 
AF149821-1|AAD48773.1| 2322|Caenorhabditis elegans nonsense-medi...    31   0.51 
U55369-1|AAK52175.1| 1247|Caenorhabditis elegans Cystic fibrosis...    29   2.1  
Z83319-4|CAB05909.1|  734|Caenorhabditis elegans Hypothetical pr...    28   6.3  
Z75536-4|CAA99832.3| 2271|Caenorhabditis elegans Hypothetical pr...    28   6.3  
Z75536-3|CAA99831.3| 2279|Caenorhabditis elegans Hypothetical pr...    28   6.3  
AF372457-1|AAK54248.1| 2279|Caenorhabditis elegans endocytosis p...    28   6.3  
AC006834-2|AAF40009.1|  562|Caenorhabditis elegans Acetylcholine...    28   6.3  
AC006804-1|AAF60755.1|  340|Caenorhabditis elegans Hypothetical ...    28   6.3  
Z69717-2|CAA93532.2|  204|Caenorhabditis elegans Hypothetical pr...    27   8.3  

>U97189-4|AAC48167.3| 2322|Caenorhabditis elegans Suppressor with
           morphological effecton genitalia protein 1, isoform a
           protein.
          Length = 2322

 Score = 31.5 bits (68), Expect = 0.51
 Identities = 17/74 (22%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
 Frame = +3

Query: 57  IQFEKGIKMQGPAVFMDISLEDQA-LELRRYFKSLGAEISEEKSPKGIEDDLHKIVGVCD 233
           ++ +KG++     V  D++L +Q+ +E + +F SL   + +  +   ++  +H+IV   +
Sbjct: 313 VKLQKGVEESLCNVLKDLNLSNQSTMEKQAFFNSLAKIVKQLPAESQVKTRVHQIVFNTE 372

Query: 234 ACFKEPSNRISKPF 275
                P NR ++ F
Sbjct: 373 TGLFTPKNRDNRMF 386


>U97189-3|AAT68901.1| 2019|Caenorhabditis elegans Suppressor with
           morphological effecton genitalia protein 1, isoform b
           protein.
          Length = 2019

 Score = 31.5 bits (68), Expect = 0.51
 Identities = 17/74 (22%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
 Frame = +3

Query: 57  IQFEKGIKMQGPAVFMDISLEDQA-LELRRYFKSLGAEISEEKSPKGIEDDLHKIVGVCD 233
           ++ +KG++     V  D++L +Q+ +E + +F SL   + +  +   ++  +H+IV   +
Sbjct: 313 VKLQKGVEESLCNVLKDLNLSNQSTMEKQAFFNSLAKIVKQLPAESQVKTRVHQIVFNTE 372

Query: 234 ACFKEPSNRISKPF 275
                P NR ++ F
Sbjct: 373 TGLFTPKNRDNRMF 386


>AF149821-1|AAD48773.1| 2322|Caenorhabditis elegans
           nonsense-mediated mRNA decay proteinSMG-1 protein.
          Length = 2322

 Score = 31.5 bits (68), Expect = 0.51
 Identities = 17/74 (22%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
 Frame = +3

Query: 57  IQFEKGIKMQGPAVFMDISLEDQA-LELRRYFKSLGAEISEEKSPKGIEDDLHKIVGVCD 233
           ++ +KG++     V  D++L +Q+ +E + +F SL   + +  +   ++  +H+IV   +
Sbjct: 313 VKLQKGVEESLCNVLKDLNLSNQSTMEKQAFFNSLAKIVKQLPAESQVKTRVHQIVFNTE 372

Query: 234 ACFKEPSNRISKPF 275
                P NR ++ F
Sbjct: 373 TGLFTPKNRDNRMF 386


>U55369-1|AAK52175.1| 1247|Caenorhabditis elegans Cystic fibrosis
            transmembrane conductanceregulator homolog protein 1
            protein.
          Length = 1247

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 17/47 (36%), Positives = 25/47 (53%)
 Frame = +3

Query: 105  DISLEDQALELRRYFKSLGAEISEEKSPKGIEDDLHKIVGVCDACFK 245
            DI L  +A +LR Y KSL   + +  SP+ + ++    V VC A  K
Sbjct: 1117 DIWLAIEACQLREYVKSLPDGLHQMVSPEKMSNEQKCQVNVCRALLK 1163


>Z83319-4|CAB05909.1|  734|Caenorhabditis elegans Hypothetical
           protein T02D1.5 protein.
          Length = 734

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 8/74 (10%)
 Frame = +1

Query: 145 ILRALAPRFQKKNHLRALRMICIRSLGFVMLVSKSRVIGYRSHSEQY--------CLYYG 300
           ILRA++PRF       A R   +R L   ++ +   +  Y  H  +Y         LY  
Sbjct: 261 ILRAVSPRFGHMVAEEARRKGHLRYLHSRIITNSEEIAFYGGHQAEYKQLDGAFNSLYQQ 320

Query: 301 FYTIRKRRKPYLSI 342
              I K+R PY+ I
Sbjct: 321 MMLIFKKRIPYIMI 334


>Z75536-4|CAA99832.3| 2271|Caenorhabditis elegans Hypothetical protein
            F18C12.2b protein.
          Length = 2271

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +3

Query: 126  ALELRRYFKSLGAEISEEKSPKGIEDDLHKI 218
            A++L  Y K   AE++    PK I DDL +I
Sbjct: 1726 AIDLLDYIKKHSAELTGAPKPKAISDDLIEI 1756


>Z75536-3|CAA99831.3| 2279|Caenorhabditis elegans Hypothetical protein
            F18C12.2a protein.
          Length = 2279

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +3

Query: 126  ALELRRYFKSLGAEISEEKSPKGIEDDLHKI 218
            A++L  Y K   AE++    PK I DDL +I
Sbjct: 1726 AIDLLDYIKKHSAELTGAPKPKAISDDLIEI 1756


>AF372457-1|AAK54248.1| 2279|Caenorhabditis elegans endocytosis
            protein RME-8 protein.
          Length = 2279

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +3

Query: 126  ALELRRYFKSLGAEISEEKSPKGIEDDLHKI 218
            A++L  Y K   AE++    PK I DDL +I
Sbjct: 1726 AIDLLDYIKKHSAELTGAPKPKAISDDLIEI 1756


>AC006834-2|AAF40009.1|  562|Caenorhabditis elegans Acetylcholine
           receptor protein 6 protein.
          Length = 562

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -2

Query: 561 FIRRWAVSKLFPKLLNSRKTSLTNPTRAA 475
           F++ W + KL  KLL SRKT      R A
Sbjct: 355 FVKHWFIEKLGKKLLISRKTEQAQYHRTA 383


>AC006804-1|AAF60755.1|  340|Caenorhabditis elegans Hypothetical
           protein Y53G8B.2 protein.
          Length = 340

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +2

Query: 449 HVYYHVIELAARVGFVREVFL 511
           H  YH + LA+R GFVRE  +
Sbjct: 201 HPGYHTLTLASRKGFVREALI 221


>Z69717-2|CAA93532.2|  204|Caenorhabditis elegans Hypothetical
           protein E01G6.2 protein.
          Length = 204

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +3

Query: 48  NKRIQFEKGIKMQGPAVFMDISLEDQALELRRYFKSLGAE 167
           NK+ +  K  K  G ++ MD+ LED+A  L    ++ G E
Sbjct: 62  NKKTKVSKNGKDFGKSMSMDVLLEDEAAALVEALETFGDE 101


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,615,882
Number of Sequences: 27780
Number of extensions: 269910
Number of successful extensions: 839
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 813
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 839
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1374536540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)