Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120859.seq
         (631 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine vasopre...    28   0.056
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    23   2.1  
AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger tran...    23   2.1  
AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory recept...    21   6.4  

>EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine
           vasopressin receptor protein.
          Length = 403

 Score = 28.3 bits (60), Expect = 0.056
 Identities = 19/71 (26%), Positives = 31/71 (43%)
 Frame = -2

Query: 630 TVEPFADNDIKIAFQIGVSHRVCYMNLYCHTTTRLKRNPFRQFLQAVIHKRISNLNLLLF 451
           T+ P+  + + +A  I     +CY   YC  T+R  R+    +L  V         L +F
Sbjct: 121 TLGPYLSSYVLMATAIDRHQAICYPLTYCSWTSR--RSKVMVYLAWVASLAFCIPQLTIF 178

Query: 450 GYESAVQIEHD 418
            Y S  + E+D
Sbjct: 179 TYTSVGEDEYD 189


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = -2

Query: 573 HRVCYMNLYCHTTTRLKRNPFRQF 502
           H V  MNL  H  T+L   PF  F
Sbjct: 676 HIVIGMNLIIHVGTQLIYRPFSHF 699


>AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger
           transcription factor protein.
          Length = 228

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -3

Query: 491 SYTNESRI*ICSSSVMRVLSKSNTTTCGNPHVKDSLL 381
           +Y N S I  C ++   V++K N T C    ++  LL
Sbjct: 32  TYNNISSISECKNNGECVINKKNRTACKACRLRKCLL 68


>AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory receptor
           candidate 5 protein.
          Length = 522

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 21/67 (31%), Positives = 28/67 (41%), Gaps = 2/67 (2%)
 Frame = +2

Query: 248 DISTILNAHSKRQCWATCVCLATNRQCIRFLKNGFCCHTTKWSLS--KANL*RGDFRTWS 421
           +ISTIL    K+Q WA         Q I+ LK      T  W L     N+    F T+ 
Sbjct: 78  NISTILTTVRKQQQWA---------QLIQNLKVVATTKTKAWFLPFVVTNIIFVLFHTYE 128

Query: 422 CSIWTAL 442
             +WT +
Sbjct: 129 AFVWTRI 135


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,535
Number of Sequences: 336
Number of extensions: 3631
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16188355
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)