Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120859.seq
(631 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB17E12.07c |sen2||tRNA-splicing endonuclease subunit Sen2|Sc... 27 1.7
SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual 26 3.9
SPAC57A7.07c |||homocysteine methyltransferase |Schizosaccharomy... 26 5.2
SPBC428.14 |||1-acylglycerol-3-phosphate acyltransferase |Schizo... 26 5.2
SPCC16A11.03c |||DUF2009 protein|Schizosaccharomyces pombe|chr 3... 25 6.8
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 25 9.0
SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|... 25 9.0
SPAC869.02c |||nitric oxide dioxygenase |Schizosaccharomyces pom... 25 9.0
SPAC18G6.12c |||hypothetical protein|Schizosaccharomyces pombe|c... 25 9.0
SPBC3H7.07c |||phosphoserine phosphatase |Schizosaccharomyces po... 25 9.0
>SPAPB17E12.07c |sen2||tRNA-splicing endonuclease subunit
Sen2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 380
Score = 27.5 bits (58), Expect = 1.7
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = +1
Query: 226 SARRQHVRHQHNIKRAFK-TPVLGHMCVLSNKPPMYSFLKEWFLLPHYKVVSLKSES 393
+ARR+ R Q +RA++ +L N P+ + L+E LP Y SLK S
Sbjct: 112 TARRRFQRKQFKAQRAYRENRARERQLLLENGKPIPASLEEDAELPEYLTKSLKDFS 168
>SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual
Length = 815
Score = 26.2 bits (55), Expect = 3.9
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Frame = +3
Query: 21 RFKANGSVCALTTPSLNDMFSF*ASTQTSNTL--ALKSINFLN 143
R K N ++ + TP +D+ S+ T+NTL ++S NF N
Sbjct: 286 RKKENVNLNLVKTPKYDDLTKMNLSSSTANTLIKGIQSYNFQN 328
>SPAC57A7.07c |||homocysteine methyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 308
Score = 25.8 bits (54), Expect = 5.2
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +2
Query: 233 ADNMCDISTILNAHSKRQCWATCVC 307
A+ +C + + SKR CW TC C
Sbjct: 163 AEVVCQLIQDMKGWSKR-CWITCTC 186
>SPBC428.14 |||1-acylglycerol-3-phosphate acyltransferase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 350
Score = 25.8 bits (54), Expect = 5.2
Identities = 10/30 (33%), Positives = 15/30 (50%)
Frame = -2
Query: 423 HDHVRKSPRQRFAFERDHFVVWQQKPFFKK 334
H HVR+ P E D F W + +++K
Sbjct: 267 HIHVRRFPISEIPTEEDQFTDWLYQRWYEK 296
>SPCC16A11.03c |||DUF2009 protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 466
Score = 25.4 bits (53), Expect = 6.8
Identities = 12/53 (22%), Positives = 26/53 (49%)
Frame = +2
Query: 44 LRLNDAIIKRHVLVLSEYADLKYLGFEKYKFFEYVIFQFCNDPHLCKIIENNY 202
+ L D + ++ + +Y + ++ K + + +F DP+L + IEN Y
Sbjct: 352 IHLGDRDVPNALMFIDKYRQVPHILAPLVKVLQQL--EFLRDPYLVQYIENEY 402
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 25.0 bits (52), Expect = 9.0
Identities = 8/27 (29%), Positives = 16/27 (59%)
Frame = -3
Query: 206 NCSCFL*SCTGAGRCKIEILHIQKIYT 126
NC C+L T + +E+ H+ K+++
Sbjct: 77 NCQCYLYHSTNSQLEPLEVFHLHKLHS 103
Score = 25.0 bits (52), Expect = 9.0
Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
Frame = +2
Query: 170 PHLCKII---ENNYNYCMQIFKAPADNMCDISTILNAHSKRQCWATCVCLATNRQCIRF 337
P LCK I + Y + I + D++C+ + + + CWA + N + I F
Sbjct: 1512 PELCKDINPEQRTYKCNLSISLSQIDDLCNGFSFTTSTFLQCCWAKTLSFLLNSRDICF 1570
>SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|chr
mitochondrial|||Manual
Length = 387
Score = 25.0 bits (52), Expect = 9.0
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +1
Query: 316 KPPMYSFLKEWFLLPHYKVV 375
K PM S + EW+LLP Y ++
Sbjct: 264 KTPM-SIVPEWYLLPFYAIL 282
>SPAC869.02c |||nitric oxide dioxygenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 25.0 bits (52), Expect = 9.0
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = -2
Query: 549 YCHTTTRLKRNPFRQFLQAVIHKRISNLNLL-LFGYESAVQIE 424
+C+++ PF+Q+L+ + K NL L F ES+V E
Sbjct: 323 FCYSSRNYVSRPFKQWLEQLKLKYKENLKLKEFFSEESSVTKE 365
>SPAC18G6.12c |||hypothetical protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 309
Score = 25.0 bits (52), Expect = 9.0
Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Frame = -1
Query: 601 QNSLPNRRLASSVLHESLLPYDHKTKT-QP 515
+N L +LH SL+PY H +T QP
Sbjct: 145 RNPFVREMLEDPLLHASLVPYIHSCRTIQP 174
>SPBC3H7.07c |||phosphoserine phosphatase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 298
Score = 25.0 bits (52), Expect = 9.0
Identities = 10/14 (71%), Positives = 13/14 (92%)
Frame = +1
Query: 415 VVVFDLDSTLITEE 456
+VVFD+DSTLI +E
Sbjct: 78 LVVFDMDSTLIQQE 91
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,809,151
Number of Sequences: 5004
Number of extensions: 61058
Number of successful extensions: 166
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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