Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120859.seq
         (631 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14751| Best HMM Match : DUF1602 (HMM E-Value=1.9)                   31   1.0  
SB_7145| Best HMM Match : RVT_1 (HMM E-Value=3.8e-25)                  28   7.2  
SB_30178| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.5  
SB_24208| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.5  
SB_19577| Best HMM Match : SERTA (HMM E-Value=7.8e-10)                 27   9.5  
SB_7049| Best HMM Match : TF_Otx (HMM E-Value=1.6)                     27   9.5  

>SB_14751| Best HMM Match : DUF1602 (HMM E-Value=1.9)
          Length = 334

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 23/83 (27%), Positives = 36/83 (43%)
 Frame = -1

Query: 589 PNRRLASSVLHESLLPYDHKTKTQPISAIPASCHTQTNLEFEFAPLRL*ECCPNRTRPRA 410
           P   + +S+  ESL    H   +  + ++ AS HT T+L   F    L     N  +P  
Sbjct: 188 PLHHITTSLYLESLQASSHTPTSLSLESLLASSHTPTSLSLVF----LQAAPSNPYKPLP 243

Query: 409 EIPTSKIRF*ERPLCSVATETIL 341
            IP S + +  +PL  + T   L
Sbjct: 244 RIPISLLPYPYKPLPRIPTSRSL 266


>SB_7145| Best HMM Match : RVT_1 (HMM E-Value=3.8e-25)
          Length = 455

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +2

Query: 161 CNDPHLCKIIENNYNYCMQIFKAPADNMCD-ISTILNAHSKRQCW 292
           C   +LCKII++NY + +  F     N+ D I TIL     ++C+
Sbjct: 131 CLTNYLCKIIKDNYLWQLIDFPTRGRNILDLILTILERCVFKRCF 175


>SB_30178| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 183

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 8/36 (22%), Positives = 21/36 (58%)
 Frame = -1

Query: 574 ASSVLHESLLPYDHKTKTQPISAIPASCHTQTNLEF 467
           A+S +H++ +PY++ T+      +P  C +   +++
Sbjct: 5   ATSTIHDARVPYEYHTRCTSALRVPYQCPSALRVQY 40


>SB_24208| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 463

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +1

Query: 394 LTWGFPHVVVFDLDSTL 444
           LTWGFP V  FD+ S +
Sbjct: 178 LTWGFPVVACFDMTSAI 194


>SB_19577| Best HMM Match : SERTA (HMM E-Value=7.8e-10)
          Length = 543

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 10/25 (40%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
 Frame = -1

Query: 544 PYDHKTKTQ-PISAIPASCHTQTNL 473
           PYDH  +   P+  +  SCHT  N+
Sbjct: 9   PYDHSCRMSLPVHFVDGSCHTNINV 33


>SB_7049| Best HMM Match : TF_Otx (HMM E-Value=1.6)
          Length = 235

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = -2

Query: 507 QFLQAVIHKRISNLNLLLFGYESAVQIEHDHVRKS 403
           +FL + +H+R+  L  LLF  ES +Q+   H RK+
Sbjct: 96  EFLWSPMHQRL--LGDLLFAIESDLQVWRSHTRKT 128


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,665,704
Number of Sequences: 59808
Number of extensions: 481276
Number of successful extensions: 1178
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1088
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1178
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1572561250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)