Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120859.seq
         (631 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR954257-14|CAJ14165.1| 1726|Anopheles gambiae BEL12_AG transpos...    27   0.65 
AB090818-2|BAC57912.1|  988|Anopheles gambiae reverse transcript...    24   4.6  
Z69977-1|CAA93817.1|  151|Anopheles gambiae ribosomal protein RS...    23   6.1  

>CR954257-14|CAJ14165.1| 1726|Anopheles gambiae BEL12_AG transposon
           polyprotein protein.
          Length = 1726

 Score = 26.6 bits (56), Expect = 0.65
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +1

Query: 331 SFLKEWFLLPHYKVVSLKSESLTWGFPHVVVFDLDST 441
           +F++E+  L H  V   ++ S  +  PH  VF  DST
Sbjct: 705 AFMQEYITLGHMSVRENENSSDGYYMPHHAVFKQDST 741


>AB090818-2|BAC57912.1|  988|Anopheles gambiae reverse transcriptase
           protein.
          Length = 988

 Score = 23.8 bits (49), Expect = 4.6
 Identities = 14/51 (27%), Positives = 22/51 (43%)
 Frame = +1

Query: 226 SARRQHVRHQHNIKRAFKTPVLGHMCVLSNKPPMYSFLKEWFLLPHYKVVS 378
           S +R H      +  AF+T      CV++N  P+   ++E       KV S
Sbjct: 803 SVQRAHRPGALRVASAFQTVSYDAACVVANTTPLVLLMQEDIRCQDEKVAS 853


>Z69977-1|CAA93817.1|  151|Anopheles gambiae ribosomal protein RS11
           protein.
          Length = 151

 Score = 23.4 bits (48), Expect = 6.1
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = +1

Query: 178 VQDYRKQLQLLYANI*SARRQHVRHQHNIKRAFKTP 285
           ++ ++KQL +       +R++ +R  H+I   FKTP
Sbjct: 7   IRAFQKQLGINLNRKNVSRKKGLRMHHSIGLGFKTP 42


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 724,609
Number of Sequences: 2352
Number of extensions: 16497
Number of successful extensions: 28
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 61468785
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)