Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120859.seq
         (631 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X85134-1|CAA59446.1|  538|Homo sapiens RB protein binding protei...    33   1.1  
BC075060-1|AAH75060.1|  538|Homo sapiens retinoblastoma binding ...    33   1.1  
BC075059-1|AAH75059.1|  538|Homo sapiens retinoblastoma binding ...    33   1.1  
BC053856-1|AAH53856.1|  538|Homo sapiens retinoblastoma binding ...    33   1.1  
BC037284-1|AAH37284.1|  500|Homo sapiens RBBP5 protein protein.        33   1.1  
AL583832-2|CAI15287.1|  500|Homo sapiens retinoblastoma binding ...    33   1.1  
AL583832-1|CAI15286.1|  538|Homo sapiens retinoblastoma binding ...    33   1.1  
BC033492-1|AAH33492.2|  753|Homo sapiens SRY (sex determining re...    31   4.5  
AB022083-1|BAA37146.1|  753|Homo sapiens SOX30 protein protein.        31   4.5  

>X85134-1|CAA59446.1|  538|Homo sapiens RB protein binding protein
           protein.
          Length = 538

 Score = 32.7 bits (71), Expect = 1.1
 Identities = 17/36 (47%), Positives = 22/36 (61%)
 Frame = +3

Query: 30  ANGSVCALTTPSLNDMFSF*ASTQTSNTLALKSINF 137
           A G +  L T S + + SF  +T TSNT A+KSI F
Sbjct: 171 AKGKILVLKTDSQDLVASFRVTTGTSNTTAIKSIEF 206


>BC075060-1|AAH75060.1|  538|Homo sapiens retinoblastoma binding
           protein 5 protein.
          Length = 538

 Score = 32.7 bits (71), Expect = 1.1
 Identities = 17/36 (47%), Positives = 22/36 (61%)
 Frame = +3

Query: 30  ANGSVCALTTPSLNDMFSF*ASTQTSNTLALKSINF 137
           A G +  L T S + + SF  +T TSNT A+KSI F
Sbjct: 171 AKGKILVLKTDSQDLVASFRVTTGTSNTTAIKSIEF 206


>BC075059-1|AAH75059.1|  538|Homo sapiens retinoblastoma binding
           protein 5 protein.
          Length = 538

 Score = 32.7 bits (71), Expect = 1.1
 Identities = 17/36 (47%), Positives = 22/36 (61%)
 Frame = +3

Query: 30  ANGSVCALTTPSLNDMFSF*ASTQTSNTLALKSINF 137
           A G +  L T S + + SF  +T TSNT A+KSI F
Sbjct: 171 AKGKILVLKTDSQDLVASFRVTTGTSNTTAIKSIEF 206


>BC053856-1|AAH53856.1|  538|Homo sapiens retinoblastoma binding
           protein 5 protein.
          Length = 538

 Score = 32.7 bits (71), Expect = 1.1
 Identities = 17/36 (47%), Positives = 22/36 (61%)
 Frame = +3

Query: 30  ANGSVCALTTPSLNDMFSF*ASTQTSNTLALKSINF 137
           A G +  L T S + + SF  +T TSNT A+KSI F
Sbjct: 171 AKGKILVLKTDSQDLVASFRVTTGTSNTTAIKSIEF 206


>BC037284-1|AAH37284.1|  500|Homo sapiens RBBP5 protein protein.
          Length = 500

 Score = 32.7 bits (71), Expect = 1.1
 Identities = 17/36 (47%), Positives = 22/36 (61%)
 Frame = +3

Query: 30  ANGSVCALTTPSLNDMFSF*ASTQTSNTLALKSINF 137
           A G +  L T S + + SF  +T TSNT A+KSI F
Sbjct: 171 AKGKILVLKTDSQDLVASFRVTTGTSNTTAIKSIEF 206


>AL583832-2|CAI15287.1|  500|Homo sapiens retinoblastoma binding
           protein 5 protein.
          Length = 500

 Score = 32.7 bits (71), Expect = 1.1
 Identities = 17/36 (47%), Positives = 22/36 (61%)
 Frame = +3

Query: 30  ANGSVCALTTPSLNDMFSF*ASTQTSNTLALKSINF 137
           A G +  L T S + + SF  +T TSNT A+KSI F
Sbjct: 171 AKGKILVLKTDSQDLVASFRVTTGTSNTTAIKSIEF 206


>AL583832-1|CAI15286.1|  538|Homo sapiens retinoblastoma binding
           protein 5 protein.
          Length = 538

 Score = 32.7 bits (71), Expect = 1.1
 Identities = 17/36 (47%), Positives = 22/36 (61%)
 Frame = +3

Query: 30  ANGSVCALTTPSLNDMFSF*ASTQTSNTLALKSINF 137
           A G +  L T S + + SF  +T TSNT A+KSI F
Sbjct: 171 AKGKILVLKTDSQDLVASFRVTTGTSNTTAIKSIEF 206


>BC033492-1|AAH33492.2|  753|Homo sapiens SRY (sex determining
           region Y)-box 30 protein.
          Length = 753

 Score = 30.7 bits (66), Expect = 4.5
 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +1

Query: 274 FKTPVLGHMCVLSNKPPMYSFLKEWFLL-PHY 366
           ++ P LGH   L   PP +SF   +FL  PHY
Sbjct: 592 YQPPPLGHPATLFGTPPRFSFHHPYFLPGPHY 623


>AB022083-1|BAA37146.1|  753|Homo sapiens SOX30 protein protein.
          Length = 753

 Score = 30.7 bits (66), Expect = 4.5
 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +1

Query: 274 FKTPVLGHMCVLSNKPPMYSFLKEWFLL-PHY 366
           ++ P LGH   L   PP +SF   +FL  PHY
Sbjct: 592 YQPPPLGHPATLFGTPPRFSFHHPYFLPGPHY 623


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,865,403
Number of Sequences: 237096
Number of extensions: 2043631
Number of successful extensions: 7541
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 7391
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7541
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6860268620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)