Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120859.seq
         (631 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    24   1.4  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   4.3  
DQ325121-1|ABD14135.1|  181|Apis mellifera complementary sex det...    22   5.7  
DQ325120-1|ABD14134.1|  181|Apis mellifera complementary sex det...    22   5.7  
DQ325119-1|ABD14133.1|  181|Apis mellifera complementary sex det...    22   5.7  
DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex det...    22   5.7  
DQ325117-1|ABD14131.1|  181|Apis mellifera complementary sex det...    22   5.7  
DQ325116-1|ABD14130.1|  181|Apis mellifera complementary sex det...    22   5.7  
DQ325114-1|ABD14128.1|  181|Apis mellifera complementary sex det...    22   5.7  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    22   5.7  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    22   5.7  
DQ325094-1|ABD14108.1|  175|Apis mellifera complementary sex det...    21   7.5  
DQ325093-1|ABD14107.1|  175|Apis mellifera complementary sex det...    21   7.5  
DQ325092-1|ABD14106.1|  175|Apis mellifera complementary sex det...    21   7.5  
DQ325091-1|ABD14105.1|  175|Apis mellifera complementary sex det...    21   7.5  
AY569716-1|AAS86669.1|  406|Apis mellifera complementary sex det...    21   7.5  
AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex det...    21   7.5  
AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex det...    21   7.5  
AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex det...    21   7.5  
AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex det...    21   7.5  
AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex det...    21   7.5  

>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -3

Query: 395 KDSLLRETTL*CGNRNHSLRN 333
           K SLL+E T+ C    H L+N
Sbjct: 379 KQSLLKENTVTCQEAMHMLKN 399


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -2

Query: 138  KNLYFSKPRYLRSAYSLKTRTC 73
            KN  F KP +  ++Y+L +  C
Sbjct: 1613 KNCLFRKPEHFVASYALISNQC 1634



 Score = 21.8 bits (44), Expect = 5.7
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = -3

Query: 362  CGNRNHSLRNEYIG 321
            CGN +H   N+++G
Sbjct: 1598 CGNFDHDSTNDFVG 1611


>DQ325121-1|ABD14135.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 6/16 (37%), Positives = 9/16 (56%)
 Frame = +2

Query: 161 CNDPHLCKIIENNYNY 208
           C +P +   + NNY Y
Sbjct: 76  CKEPKIISSLSNNYKY 91


>DQ325120-1|ABD14134.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 6/16 (37%), Positives = 9/16 (56%)
 Frame = +2

Query: 161 CNDPHLCKIIENNYNY 208
           C +P +   + NNY Y
Sbjct: 76  CKEPKIISSLSNNYKY 91


>DQ325119-1|ABD14133.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 6/16 (37%), Positives = 9/16 (56%)
 Frame = +2

Query: 161 CNDPHLCKIIENNYNY 208
           C +P +   + NNY Y
Sbjct: 76  CKEPKIISSLSNNYKY 91


>DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 6/16 (37%), Positives = 9/16 (56%)
 Frame = +2

Query: 161 CNDPHLCKIIENNYNY 208
           C +P +   + NNY Y
Sbjct: 76  CKEPKIISSLSNNYKY 91


>DQ325117-1|ABD14131.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 6/16 (37%), Positives = 9/16 (56%)
 Frame = +2

Query: 161 CNDPHLCKIIENNYNY 208
           C +P +   + NNY Y
Sbjct: 76  CKEPKIISSLSNNYKY 91


>DQ325116-1|ABD14130.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 6/16 (37%), Positives = 9/16 (56%)
 Frame = +2

Query: 161 CNDPHLCKIIENNYNY 208
           C +P +   + NNY Y
Sbjct: 76  CKEPKIISSLSNNYKY 91


>DQ325114-1|ABD14128.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 6/16 (37%), Positives = 9/16 (56%)
 Frame = +2

Query: 161 CNDPHLCKIIENNYNY 208
           C +P +   + NNY Y
Sbjct: 76  CKEPKIISSLSNNYKY 91


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -3

Query: 611 IMISK*PSKSASRIECAT*ISTAIRPQD 528
           ++I +  S  A R EC T   T  RP D
Sbjct: 246 VLIERAKSIRARRTECVTNSVTCDRPSD 273


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -3

Query: 425 NTTTCGNPHVKDSL 384
           NT  C NP+ +DSL
Sbjct: 106 NTKNCVNPYDRDSL 119


>DQ325094-1|ABD14108.1|  175|Apis mellifera complementary sex
           determiner protein.
          Length = 175

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 14/62 (22%), Positives = 25/62 (40%)
 Frame = +2

Query: 23  LQSKWICLRLNDAIIKRHVLVLSEYADLKYLGFEKYKFFEYVIFQFCNDPHLCKIIENNY 202
           L+ +  C R + +  +   L  +E    KY    K +       +   +P +   + NNY
Sbjct: 30  LEERTSCKRYSRSREREQKLYKNEREYRKYGETSKERSRNRTEREKSKEPKIISSLSNNY 89

Query: 203 NY 208
           NY
Sbjct: 90  NY 91


>DQ325093-1|ABD14107.1|  175|Apis mellifera complementary sex
           determiner protein.
          Length = 175

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 14/62 (22%), Positives = 25/62 (40%)
 Frame = +2

Query: 23  LQSKWICLRLNDAIIKRHVLVLSEYADLKYLGFEKYKFFEYVIFQFCNDPHLCKIIENNY 202
           L+ +  C R + +  +   L  +E    KY    K +       +   +P +   + NNY
Sbjct: 30  LEERTSCKRYSRSREREQKLYKNEREYRKYGETSKERSRNRTEREKSKEPKIISSLSNNY 89

Query: 203 NY 208
           NY
Sbjct: 90  NY 91


>DQ325092-1|ABD14106.1|  175|Apis mellifera complementary sex
           determiner protein.
          Length = 175

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 14/62 (22%), Positives = 25/62 (40%)
 Frame = +2

Query: 23  LQSKWICLRLNDAIIKRHVLVLSEYADLKYLGFEKYKFFEYVIFQFCNDPHLCKIIENNY 202
           L+ +  C R + +  +   L  +E    KY    K +       +   +P +   + NNY
Sbjct: 30  LEERTSCKRYSRSREREQKLYKNEREYRKYGETSKERSRNRTEREKSKEPKIISSLSNNY 89

Query: 203 NY 208
           NY
Sbjct: 90  NY 91


>DQ325091-1|ABD14105.1|  175|Apis mellifera complementary sex
           determiner protein.
          Length = 175

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 14/62 (22%), Positives = 25/62 (40%)
 Frame = +2

Query: 23  LQSKWICLRLNDAIIKRHVLVLSEYADLKYLGFEKYKFFEYVIFQFCNDPHLCKIIENNY 202
           L+ +  C R + +  +   L  +E    KY    K +       +   +P +   + NNY
Sbjct: 30  LEERTSCKRYSRSREREQKLYKNEREYRKYGETSKERSRNRTEREKSKEPKIISSLSNNY 89

Query: 203 NY 208
           NY
Sbjct: 90  NY 91


>AY569716-1|AAS86669.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 14/62 (22%), Positives = 25/62 (40%)
 Frame = +2

Query: 23  LQSKWICLRLNDAIIKRHVLVLSEYADLKYLGFEKYKFFEYVIFQFCNDPHLCKIIENNY 202
           L+ +  C R + +  +   L  +E    KY    K +       +   +P +   + NNY
Sbjct: 263 LEERTSCKRYSRSREREQKLYKNEREYRKYGETSKERSRNRTEREKSKEPKIISSLSNNY 322

Query: 203 NY 208
           NY
Sbjct: 323 NY 324


>AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 14/62 (22%), Positives = 25/62 (40%)
 Frame = +2

Query: 23  LQSKWICLRLNDAIIKRHVLVLSEYADLKYLGFEKYKFFEYVIFQFCNDPHLCKIIENNY 202
           L+ +  C R + +  +   L  +E    KY    K +       +   +P +   + NNY
Sbjct: 263 LEERTSCKRYSRSREREQKLYKNEREYRKYGETSKERSRNRTEREKSKEPKIISSLSNNY 322

Query: 203 NY 208
           NY
Sbjct: 323 NY 324


>AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 14/62 (22%), Positives = 25/62 (40%)
 Frame = +2

Query: 23  LQSKWICLRLNDAIIKRHVLVLSEYADLKYLGFEKYKFFEYVIFQFCNDPHLCKIIENNY 202
           L+ +  C R + +  +   L  +E    KY    K +       +   +P +   + NNY
Sbjct: 263 LEERTSCKRYSRSREREQKLYKNEREYRKYGETSKERSRNRTEREKSKEPKIISSLSNNY 322

Query: 203 NY 208
           NY
Sbjct: 323 NY 324


>AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 14/62 (22%), Positives = 25/62 (40%)
 Frame = +2

Query: 23  LQSKWICLRLNDAIIKRHVLVLSEYADLKYLGFEKYKFFEYVIFQFCNDPHLCKIIENNY 202
           L+ +  C R + +  +   L  +E    KY    K +       +   +P +   + NNY
Sbjct: 263 LEERTSCKRYSRSREREQKLYKNEREYRKYGETSKERSRNRTEREKSKEPKIISSLSNNY 322

Query: 203 NY 208
           NY
Sbjct: 323 NY 324


>AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 14/62 (22%), Positives = 25/62 (40%)
 Frame = +2

Query: 23  LQSKWICLRLNDAIIKRHVLVLSEYADLKYLGFEKYKFFEYVIFQFCNDPHLCKIIENNY 202
           L+ +  C R + +  +   L  +E    KY    K +       +   +P +   + NNY
Sbjct: 263 LEERTSCKRYSRSREREQKLYKNEREYRKYGETSKERSRNRTEREKSKEPKIISSLSNNY 322

Query: 203 NY 208
           NY
Sbjct: 323 NY 324


>AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 14/62 (22%), Positives = 25/62 (40%)
 Frame = +2

Query: 23  LQSKWICLRLNDAIIKRHVLVLSEYADLKYLGFEKYKFFEYVIFQFCNDPHLCKIIENNY 202
           L+ +  C R + +  +   L  +E    KY    K +       +   +P +   + NNY
Sbjct: 252 LEERTSCKRYSRSREREQKLYKNEREYRKYGETSKERSRNRTEREKSKEPKIISSLSNNY 311

Query: 203 NY 208
           NY
Sbjct: 312 NY 313


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,165
Number of Sequences: 438
Number of extensions: 4189
Number of successful extensions: 41
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18826962
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)