Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120859.seq
         (631 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g25550.1 68418.m03040 leucine-rich repeat family protein / ex...    32   0.27 
At4g38360.2 68417.m05424 expressed protein contains Pfam profile...    30   1.1  
At4g38360.1 68417.m05423 expressed protein contains Pfam profile...    30   1.1  
At5g59020.1 68418.m07393 expressed protein                             29   1.9  
At1g04570.1 68414.m00450 integral membrane transporter family pr...    29   1.9  
At4g16170.1 68417.m02455 expressed protein                             28   5.9  
At1g10330.1 68414.m01163 pentatricopeptide (PPR) repeat-containi...    28   5.9  
At4g33280.1 68417.m04735 transcriptional factor B3 family protei...    27   7.8  

>At5g25550.1 68418.m03040 leucine-rich repeat family protein /
           extensin family protein similar to leucine-rich
           repeat/extensin 1 (GI:13809918) [Arabidopsis thaliana];
           contains Pfam PF00560: Leucine Rich Repeat domains
          Length = 433

 Score = 32.3 bits (70), Expect = 0.27
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = +2

Query: 122 EKYKFFEYVIFQFCNDPHLCKIIENNYNYCMQIFKAPAD 238
           EK + F Y    F  +P  C+ +E NYNY M  FK   D
Sbjct: 314 EKLRDFRYGSNYFTGEPATCRYLE-NYNYTMNCFKDVRD 351


>At4g38360.2 68417.m05424 expressed protein contains Pfam profile
           PF03619: Domain of unknown function
          Length = 485

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 4/41 (9%)
 Frame = +1

Query: 265 KRAFKTPVLGHMC---VLSNKPPMYSFLKEWFLLP-HYKVV 375
           +++FKTP+L H     ++ +  PM  FLK W L P  Y+VV
Sbjct: 120 RKSFKTPLLDHKDEKGIIKHPFPMNLFLKPWRLSPWFYQVV 160


>At4g38360.1 68417.m05423 expressed protein contains Pfam profile
           PF03619: Domain of unknown function
          Length = 304

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 4/41 (9%)
 Frame = +1

Query: 265 KRAFKTPVLGHMC---VLSNKPPMYSFLKEWFLLP-HYKVV 375
           +++FKTP+L H     ++ +  PM  FLK W L P  Y+VV
Sbjct: 120 RKSFKTPLLDHKDEKGIIKHPFPMNLFLKPWRLSPWFYQVV 160


>At5g59020.1 68418.m07393 expressed protein
          Length = 780

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 16/38 (42%), Positives = 22/38 (57%)
 Frame = +3

Query: 381 QKRIFDVGISARGRVRFGQHSHNRRGANSNSRFVCV*Q 494
           Q+++  VG+   GR+   QHSHNR   +  SRF  V Q
Sbjct: 33  QEKLLSVGVLDWGRLEKWQHSHNR--VSMKSRFPMVSQ 68


>At1g04570.1 68414.m00450 integral membrane transporter family
           protein contains 8 transmembrane domains; contains Pfam
           PF03092: BT1 family; contains TIGRFAMS TIGR00788:
           folate/biopterin transporter; similar to hypothetical
           protein GB:AAD38263
          Length = 542

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 4/81 (4%)
 Frame = +1

Query: 286 VLGHMC---VLSNKPPMYSFLKEWFLLPHYKVVSLKSESLTWGFPHVVVFDLDSTLITEE 456
           VLG++    +L   PP  SFL    LL    VVSL S+  ++G P +   +  S L + +
Sbjct: 232 VLGNLLGGYLLLTTPPKISFLVFSALLSLQLVVSLSSKEESFGLPRIA--ETSSVLESVK 289

Query: 457 EQI-QIRDSFVYDSLQELPKW 516
           +QI  ++++   D + +   W
Sbjct: 290 KQISNLKEAIQADEISQPLIW 310


>At4g16170.1 68417.m02455 expressed protein
          Length = 429

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = +1

Query: 382 KSESLTWGFPHVVVFDLDSTLITEEEQIQIRDSFVYD 492
           K+ +L   FPH +V  L+  L T EEQ+    S +YD
Sbjct: 314 KTTTLPEPFPHELVERLEKYLDTVEEQLVDLSSLLYD 350


>At1g10330.1 68414.m01163 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 467

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 9/32 (28%), Positives = 19/32 (59%)
 Frame = -2

Query: 336 KRIHWRFVAKHTHVAQHWRFECAFNIVLMSHM 241
           K+IH   +  +  VA  W+ +C +N ++ S++
Sbjct: 31  KQIHTVLLTSNALVASRWKTKCVYNTLIRSYL 62


>At4g33280.1 68417.m04735 transcriptional factor B3 family protein
           contains Pfam profile PF02362: B3 DNA binding domain
          Length = 461

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 13/45 (28%), Positives = 20/45 (44%)
 Frame = -2

Query: 348 PFFKKRIHWRFVAKHTHVAQHWRFECAFNIVLMSHMLSAGALNIC 214
           P F  R+ +  + +  HV     F  AFN+ + + M   G  N C
Sbjct: 31  PGFHNRLQFMLLFQFLHVFTFLCFPPAFNLEIYTQMYQRGLSNFC 75


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,699,118
Number of Sequences: 28952
Number of extensions: 314576
Number of successful extensions: 791
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 775
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 790
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1285411824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)