Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120858.seq
         (620 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC553.10 |||conserved fungal protein|Schizosaccharomyces pombe...    27   1.7  
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p...    27   2.9  
SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces pomb...    26   3.8  
SPBC354.13 |rga6||GTPase activating protein Rga6|Schizosaccharom...    26   3.8  
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ...    26   5.1  
SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1 |Schizosa...    25   6.7  
SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces pombe...    25   6.7  
SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   8.8  
SPCC1322.12c |bub1||serine/threonine protein kinase Bub1|Schizos...    25   8.8  
SPBPB2B2.10c |||galactose-1-phosphate uridylyltransferase |Schiz...    25   8.8  

>SPCC553.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 349

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +2

Query: 200 STSTASTNRRLSMPTKSSTCSR*RGKAGRPAVFAPTHSAHYQI 328
           S+S+ S++R  S  T   T S  +  + RP VF  T  +HY I
Sbjct: 163 SSSSKSSSRSSSRTTSHRTTSH-KSSSYRPTVFPYTTISHYNI 204


>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 728

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = +3

Query: 315 LITKSGVIQLIMKSKLPYXIELQEWLL 395
           L+ K GV+ L+ K KLP+ +  ++ ++
Sbjct: 542 LLVKDGVVHLVDKVKLPFSVSQKDMII 568


>SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 262

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +2

Query: 179 IVNGQYVSTSTASTNRRLSMPTKSSTCS 262
           I  G Y STS +ST+   + P+ SST S
Sbjct: 129 ISGGIYSSTSASSTSSSTATPSSSSTTS 156


>SPBC354.13 |rga6||GTPase activating protein
           Rga6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 733

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -2

Query: 589 VSASRRATIISLANKMSESVASAKSALPPSIFASDRQF 476
           +  S+ +  +S  N++S S        PPS F S RQF
Sbjct: 198 LQTSQDSPSLSATNQLSSSDTLEPLQYPPSSFGSQRQF 235


>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 962

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -1

Query: 587 FSVASSHNHFVGKQNERIGCFRQI 516
           F  + SH H     N+++ CFR++
Sbjct: 218 FFCSYSHRHETATSNKQVSCFREV 241


>SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 669

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +1

Query: 118 GDEQPVRFVAKDIASSLKYVNCERAIRVHVDGKYKSTFEHAD 243
           GDE     V+ D  S    V+  +   ++  GKY+ TF H D
Sbjct: 48  GDEIECIVVSMDDKSKKARVSLRQEDILNALGKYEETFRHVD 89


>SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 716

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 9/21 (42%), Positives = 17/21 (80%)
 Frame = +3

Query: 546 LFANEMIVARRDAETARQDCE 608
           +FANE+++ + DA++ +QD E
Sbjct: 556 IFANEILIEQADAQSFKQDEE 576


>SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 646

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -2

Query: 199 HVLPVHNLHILNCW 158
           HVLP+  L +LNC+
Sbjct: 405 HVLPIRQLFLLNCY 418


>SPCC1322.12c |bub1||serine/threonine protein kinase
           Bub1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1044

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -2

Query: 241 RHAQTSICTCRRRGHVLPVHNLHILN 164
           R A T +   R    +LPVH LH+ +
Sbjct: 776 RQAMTRLKGLRETNSILPVHQLHMFH 801


>SPBPB2B2.10c |||galactose-1-phosphate uridylyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 369

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 12/54 (22%), Positives = 26/54 (48%)
 Frame = +1

Query: 388 GFWRRSFLKCYARRKYAPAVEMDTNDVIAKIDDLTQKLTVATQIWRKQPIRSFC 549
           GF    +   Y      PAV +D  D +    ++T+  T+ T++++ + ++  C
Sbjct: 65  GFENPKYETTYVFPNDYPAVRVDQPDYMQDESEITKGNTLKTRMFKTEGVKGKC 118


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,548,987
Number of Sequences: 5004
Number of extensions: 52324
Number of successful extensions: 151
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)