Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120858.seq
(620 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_6484| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.43
SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_46249| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_52713| Best HMM Match : 7tm_1 (HMM E-Value=4.9e-26) 29 2.3
SB_32738| Best HMM Match : 7tm_1 (HMM E-Value=2.6e-13) 29 2.3
SB_19726| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_22003| Best HMM Match : Ank (HMM E-Value=1.8e-39) 29 3.0
SB_45993| Best HMM Match : TEP1_N (HMM E-Value=0.48) 28 7.0
SB_55713| Best HMM Match : zf-C3HC4 (HMM E-Value=2.8) 27 9.3
SB_40253| Best HMM Match : Spectrin (HMM E-Value=5.9e-16) 27 9.3
SB_23259| Best HMM Match : zf-C2H2 (HMM E-Value=0) 27 9.3
>SB_6484| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 741
Score = 31.9 bits (69), Expect = 0.43
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = +3
Query: 483 RSDAKIDGGNADLAEATDSLILFANEMIVARRDAETARQDCEN 611
R D K+D A L EA L + I R+D ++ +DCEN
Sbjct: 2 RDDEKVDPAEA-LLEAQQELATLQRQYICLRKDKKSYTEDCEN 43
>SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 592
Score = 29.9 bits (64), Expect = 1.7
Identities = 17/54 (31%), Positives = 25/54 (46%)
Frame = -2
Query: 307 CGCKYSGSPCFATLSGACAGFGRHAQTSICTCRRRGHVLPVHNLHILNCWRCPW 146
C C Y G+ +S A R A+ +CT R +L +N + NC RC +
Sbjct: 175 CVCVYGGTG----ISEQIAELKRGAEIIVCTPGRMIDMLTANNGRVTNCQRCTY 224
>SB_46249| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 834
Score = 29.5 bits (63), Expect = 2.3
Identities = 24/66 (36%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Frame = +3
Query: 249 PAHAPDSVAKQGDPLYLHPHTVLITKSGVIQLIMKSKLPYXIELQEWL-LEEVIP-QVLC 422
P + + K P HP TVLI +I L + + L I LQ L L+ +IP QVL
Sbjct: 316 PLYKSSPLYKSSPPTSTHPSTVLIPLQVLIPLQVLTPLQVLIPLQVLLPLQVLIPLQVLI 375
Query: 423 TAQVRA 440
V A
Sbjct: 376 PLHVLA 381
>SB_52713| Best HMM Match : 7tm_1 (HMM E-Value=4.9e-26)
Length = 333
Score = 29.5 bits (63), Expect = 2.3
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = -1
Query: 260 SMCWIWSACSNVDLYLPSTWTRI 192
SMC +++ C N+ L++P T+ I
Sbjct: 258 SMCTVYNVCKNIPLHIPQTFLHI 280
>SB_32738| Best HMM Match : 7tm_1 (HMM E-Value=2.6e-13)
Length = 323
Score = 29.5 bits (63), Expect = 2.3
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Frame = -1
Query: 302 VQIQRVALLCHAIWSMCWIWSACS--NVDLYLPST 204
V +QRV ++C +W C I+SA + V +Y P T
Sbjct: 157 VTVQRVLIICGGMWVSCSIFSAVTLYGVHVYHPVT 191
>SB_19726| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 196
Score = 29.5 bits (63), Expect = 2.3
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = -1
Query: 260 SMCWIWSACSNVDLYLPSTWTRI 192
SMC +++ C N+ L++P T+ I
Sbjct: 121 SMCTVYNVCKNIPLHIPQTFLHI 143
>SB_22003| Best HMM Match : Ank (HMM E-Value=1.8e-39)
Length = 304
Score = 29.1 bits (62), Expect = 3.0
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = -3
Query: 510 CHRQFLRQIVNFGNNIICIHFNGRRVLAPCIALE 409
CH +R +V G ++ C+ F G V+ C +L+
Sbjct: 216 CHNDAVRLLVECGASVDCLDFTGFSVIRRCQSLQ 249
>SB_45993| Best HMM Match : TEP1_N (HMM E-Value=0.48)
Length = 369
Score = 27.9 bits (59), Expect = 7.0
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = -2
Query: 328 DLVMSTVCGCKYSGSPCFATLSGACAG 248
D+VM TV GC+YS S + +L C G
Sbjct: 248 DVVMRTVRGCRYSDS-AWMSLCAQCVG 273
>SB_55713| Best HMM Match : zf-C3HC4 (HMM E-Value=2.8)
Length = 129
Score = 27.5 bits (58), Expect = 9.3
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = -2
Query: 325 LVMSTVCGCKYSGSPCFATLSGACAGFGRHAQTSICTCR 209
+VM VC C+Y S C CA R ++C CR
Sbjct: 65 VVMCAVCACRYVRSVCLL----LCAQCLRVVICAVCACR 99
Score = 27.5 bits (58), Expect = 9.3
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = -2
Query: 325 LVMSTVCGCKYSGSPCFATLSGACAGFGRHAQTSICTCR 209
+V+ VC C+Y S C + CA R ++C CR
Sbjct: 90 VVICAVCACRYVRSVCVS----LCAQCLRVVMCAVCACR 124
>SB_40253| Best HMM Match : Spectrin (HMM E-Value=5.9e-16)
Length = 1222
Score = 27.5 bits (58), Expect = 9.3
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +1
Query: 184 ERAIRVHVDGKYKSTFEHADQIQHMLQIAWQ 276
+RAI VHVDG Y + + +L++ Q
Sbjct: 1059 QRAIEVHVDGSYDRAEQQVKDVMDVLKVQEQ 1089
>SB_23259| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 1449
Score = 27.5 bits (58), Expect = 9.3
Identities = 17/52 (32%), Positives = 22/52 (42%)
Frame = +3
Query: 204 RRRQVQIDV*ACRPNPAHAPDSVAKQGDPLYLHPHTVLITKSGVIQLIMKSK 359
RRR +Q D+ R P P A G P ++ PH G L +K K
Sbjct: 536 RRRHLQNDILNGRKVPEEKPSETATNGPP-FICPHANCGRSFGARHLYLKHK 586
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,970,025
Number of Sequences: 59808
Number of extensions: 428733
Number of successful extensions: 1056
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1002
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1056
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1536271375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -