Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120858.seq
         (620 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    22   4.2  
EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    22   5.5  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    21   7.3  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   9.7  
AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          21   9.7  
AB178034-1|BAD27112.1|   76|Apis mellifera apiceropsin protein.        21   9.7  

>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = +1

Query: 235 HADQIQHMLQIAWQSRATRCICTH 306
           H D   H  QIAW +      C+H
Sbjct: 549 HRDTYIHAQQIAWMALKMIQACSH 572


>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +1

Query: 193 IRVHVDGKYKSTFEHADQIQH 255
           + V+ DG Y + FE ++ I H
Sbjct: 34  LEVNFDGNYINNFETSNGISH 54


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = -2

Query: 214 CRRRGHVLPVHNLHILNCWRCPWPQ 140
           CR + HV  +H+  ++  +R P  Q
Sbjct: 148 CRPKIHVFSLHDNKLITMYRFPQNQ 172


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 6/17 (35%), Positives = 12/17 (70%)
 Frame = -1

Query: 299 QIQRVALLCHAIWSMCW 249
           ++ +VAL+  ++W M W
Sbjct: 275 KLAKVALMTISLWFMAW 291


>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = +3

Query: 297 LHPHTVLIT 323
           LHPHT ++T
Sbjct: 104 LHPHTAMVT 112


>AB178034-1|BAD27112.1|   76|Apis mellifera apiceropsin protein.
          Length = 76

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 6/17 (35%), Positives = 12/17 (70%)
 Frame = -1

Query: 299 QIQRVALLCHAIWSMCW 249
           ++ +VAL+  ++W M W
Sbjct: 25  KLAKVALMTISLWFMAW 41


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,478
Number of Sequences: 438
Number of extensions: 3772
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18460203
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)