Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120858.seq
         (620 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g19390.2 68418.m02311 pleckstrin homology (PH) domain-contain...    29   3.3  
At5g19390.1 68418.m02310 pleckstrin homology (PH) domain-contain...    29   3.3  
At2g02790.1 68415.m00222 calmodulin-binding family protein very ...    28   4.3  
At5g08780.1 68418.m01041 histone H1/H5 family protein contains P...    28   5.7  
At4g25320.1 68417.m03643 DNA-binding protein-related contains Pf...    28   5.7  
At1g77060.1 68414.m08972 mutase family protein similar to carbox...    28   5.7  
At1g70420.1 68414.m08102 expressed protein                             28   5.7  
At5g43490.1 68418.m05317 hypothetical protein similar to unknown...    27   7.6  
At5g08630.1 68418.m01026 DDT domain-containing protein low simil...    27   7.6  

>At5g19390.2 68418.m02311 pleckstrin homology (PH) domain-containing
           protein / RhoGAP domain-containing protein weak
           similarity to rho-GTPase activating protein [Homo
           sapiens] GI:14245732; contains Pfam profiles PF00169: PH
           domain, PF00620: RhoGAP domain
          Length = 870

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 17/47 (36%), Positives = 22/47 (46%)
 Frame = +1

Query: 58  QVKIGEFKFGEDTFTLRYVLGDEQPVRFVAKDIASSLKYVNCERAIR 198
           Q   G F    DT   +Y+       RF+ +D  S+L YVN ER  R
Sbjct: 691 QTHFGSFSDARDTH--QYLQNHNPQKRFLQQDFDSTLAYVNHERKQR 735


>At5g19390.1 68418.m02310 pleckstrin homology (PH) domain-containing
           protein / RhoGAP domain-containing protein weak
           similarity to rho-GTPase activating protein [Homo
           sapiens] GI:14245732; contains Pfam profiles PF00169: PH
           domain, PF00620: RhoGAP domain
          Length = 822

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 17/47 (36%), Positives = 22/47 (46%)
 Frame = +1

Query: 58  QVKIGEFKFGEDTFTLRYVLGDEQPVRFVAKDIASSLKYVNCERAIR 198
           Q   G F    DT   +Y+       RF+ +D  S+L YVN ER  R
Sbjct: 691 QTHFGSFSDARDTH--QYLQNHNPQKRFLQQDFDSTLAYVNHERKQR 735


>At2g02790.1 68415.m00222 calmodulin-binding family protein very low
           similarity to SP|P12036 Neurofilament triplet H protein
           {Homo sapiens}; contains Pfam profile PF00612: IQ
           calmodulin-binding motif
          Length = 636

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
 Frame = +2

Query: 185 NGQYVSTSTASTNRRLSMPTKSSTCSR*RG--KAGR--PAVFAPTHSAHYQI 328
           NG   S +T  ++RR S+P K     +  G  ++GR  P+  APT SA  +I
Sbjct: 472 NGNVASENTKPSDRRASLPAKIENHHQDDGLTQSGRKIPSYMAPTASAKARI 523


>At5g08780.1 68418.m01041 histone H1/H5 family protein contains Pfam
           domain, PF00538: linker histone H1 and H5 family
          Length = 457

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
 Frame = +1

Query: 184 ERAIRVHVDGKYKST-FEHADQIQHMLQIAWQSRATRCICTHTQCSLP 324
           E AI   +  KYK+  F H + + H L    + R   C C +   SLP
Sbjct: 77  EDAISEFIKSKYKNLPFAHTNLLSHHLAKLVEKREILCDCNNDCYSLP 124


>At4g25320.1 68417.m03643 DNA-binding protein-related contains Pfam
           domain PF03479: Domain of unknown function (DUF296),
           found in AT-hook motifs Pfam:PF02178
          Length = 404

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +2

Query: 203 TSTASTNRRLSMPTKSSTCSR*RGKAGRPAVFAP 304
           T  A+T   L+MPT++++  + + K GRP  + P
Sbjct: 64  TENAATPFSLTMPTENTSAEQLKKKRGRPRKYNP 97


>At1g77060.1 68414.m08972 mutase family protein similar to
           carboxyvinyl-carboxyphosphonate phosphorylmutase
           GB:O49290 from [Arabidopsis thaliana]; similar to
           carboxyphosphonoenolpyruvate mutase (GI:47149)
           [Streptomyces hygroscopicus]; contains Prosite PS00161:
           Isocitrate lyase signature
          Length = 339

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +3

Query: 249 PAHAPDSVAKQGDPLYLHPHTVLITKSGVIQLIMKS 356
           P H PD + + G  L +HP T L   +  +  ++K+
Sbjct: 256 PLHTPDELKEMGFHLIVHPLTALYASTRALVDVLKT 291


>At1g70420.1 68414.m08102 expressed protein
          Length = 272

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 17/49 (34%), Positives = 26/49 (53%)
 Frame = +2

Query: 185 NGQYVSTSTASTNRRLSMPTKSSTCSR*RGKAGRPAVFAPTHSAHYQIW 331
           NG   ++ST+ST  RLS   KSS   + + K  +      T SAH +++
Sbjct: 187 NGSSSTSSTSSTAARLSGVVKSSEKGKEKTKTDKKKDKMRTKSAHEKLY 235


>At5g43490.1 68418.m05317 hypothetical protein similar to unknown
           protein (gb|AAF20218.1)
          Length = 131

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
 Frame = +3

Query: 237 CRPNPAHAPDSVA--KQGDPLYLHPHTVLITKSGVIQLIMKSKLPYXIELQEWLL 395
           C P+P  A   V   + G+P    PH  L   + ++ +  +  LP   + QEWLL
Sbjct: 33  CPPSPLAATMKVKVKENGEPSAKPPHPDLKYLNQILHVPTRELLPEIDDDQEWLL 87


>At5g08630.1 68418.m01026 DDT domain-containing protein low
           similarity to SP|Q9NRL2 Bromodomain adjacent to zinc
           finger domain protein 1A (ATP-utilizing chromatin
           assembly and remodeling factor 1) (ATP-dependent
           chromatin remodelling protein) (Williams syndrome
           transcription factor-related chromatin remodeling factor
           180) {Homo sapiens}; contains Pfam profile PF02791: DDT
           domain
          Length = 723

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = +1

Query: 376 NYKNGFWRRSFLKCYARRKYAPAVEMDTNDVIAKIDDLTQKL 501
           ++K   + R+FLK + R     ++    ND +AK  ++T+K+
Sbjct: 170 SWKKFPFSRNFLKSFIRDSTCHSIPWVVNDYLAKAHEITRKI 211


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,593,434
Number of Sequences: 28952
Number of extensions: 286807
Number of successful extensions: 727
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 710
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 727
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1255974912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)