Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120857.seq
         (630 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A4FSG8 Cluster: Putative uncharacterized protein; n=1; ...    75   2e-12
UniRef50_O15792 Cluster: CG2; n=89; Plasmodium falciparum|Rep: C...    33   5.7  
UniRef50_Q48574 Cluster: ORFC; n=2; Leptospira interrogans|Rep: ...    33   7.5  

>UniRef50_A4FSG8 Cluster: Putative uncharacterized protein; n=1;
           Thermobia domestica|Rep: Putative uncharacterized
           protein - Thermobia domestica (firebrat)
          Length = 53

 Score = 74.5 bits (175), Expect = 2e-12
 Identities = 35/53 (66%), Positives = 43/53 (81%)
 Frame = +3

Query: 339 LIKRKNYLRDNSVIFFFSSNKKKSLRPRCWIKIKFKCRSLKF*SVRSLKSYMI 497
           +I R +YLRDNSVIFF +S +++ LRPRCWIKI  +CRSL + SVR LKSYMI
Sbjct: 1   MIVRLSYLRDNSVIFFENSYRQERLRPRCWIKILSRCRSLVYRSVRPLKSYMI 53


>UniRef50_O15792 Cluster: CG2; n=89; Plasmodium falciparum|Rep: CG2 -
            Plasmodium falciparum
          Length = 2819

 Score = 33.1 bits (72), Expect = 5.7
 Identities = 26/80 (32%), Positives = 37/80 (46%), Gaps = 4/80 (5%)
 Frame = +3

Query: 264  VGVIKKFN*LFLIVYINK*LNDPILLIKRKNYLRD----NSVIFFFSSNKKKSLRPRCWI 431
            +  I +   ++    IN  L    + +KR  YL +    N+ I FF + + K L  R  I
Sbjct: 2088 INTINENGNMYTYSLINSTLTLNNIHMKRWKYLINTYCFNNYIMFFQTTQNKYLLNRRLI 2147

Query: 432  KIKFKCRSLKF*SVRSLKSY 491
            K  F  RSLKF     +KSY
Sbjct: 2148 KKAFFLRSLKFDDFNDIKSY 2167


>UniRef50_Q48574 Cluster: ORFC; n=2; Leptospira interrogans|Rep:
           ORFC - Leptospira interrogans serovar
           Icterohaemorrhagiae
          Length = 85

 Score = 32.7 bits (71), Expect = 7.5
 Identities = 13/43 (30%), Positives = 26/43 (60%)
 Frame = +3

Query: 297 LIVYINK*LNDPILLIKRKNYLRDNSVIFFFSSNKKKSLRPRC 425
           + VY NK L D  ++++   + + N + F FS N++++ + RC
Sbjct: 5   ICVYYNKLLYDQKVILRLLEFYKSNYIPFLFSENQRRTRQLRC 47


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 440,774,433
Number of Sequences: 1657284
Number of extensions: 6713330
Number of successful extensions: 9481
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9312
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9478
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 46466611856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)