Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120857.seq
         (630 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    21   6.4  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    21   8.5  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    21   8.5  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    21   8.5  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    21   8.5  

>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -2

Query: 116 IFHPIFHTSHQLKD**LCYLCTVKILQPFNKYI 18
           +F  IF+ +H       CYL T  +L   N+YI
Sbjct: 808 VFLTIFNAAH-------CYLATELVLMLKNRYI 833


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = -3

Query: 160 IKKLNSIFFYKRDSLYFIQSFIQV 89
           IKKL  I      S YFI  F+ V
Sbjct: 281 IKKLGKIKENLEQSRYFIYMFVSV 304


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = -3

Query: 160 IKKLNSIFFYKRDSLYFIQSFIQV 89
           IKKL  I      S YFI  F+ V
Sbjct: 281 IKKLGKIKENLEQSRYFIYMFVSV 304


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = -3

Query: 160 IKKLNSIFFYKRDSLYFIQSFIQV 89
           IKKL  I      S YFI  F+ V
Sbjct: 281 IKKLGKIKENLEQSRYFIYMFVSV 304


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = -3

Query: 160 IKKLNSIFFYKRDSLYFIQSFIQV 89
           IKKL  I      S YFI  F+ V
Sbjct: 281 IKKLGKIKENLEQSRYFIYMFVSV 304


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 115,482
Number of Sequences: 336
Number of extensions: 2117
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16188355
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)