Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120857.seq
         (630 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD subfamily|Sch...    27   1.7  
SPBC21C3.07c |||actin binding methyltransferase |Schizosaccharom...    25   6.8  

>SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD
           subfamily|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 887

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 19/50 (38%), Positives = 25/50 (50%)
 Frame = +2

Query: 434 DKI*M*KFKILICSIIKILHDLSSNGVSQVGFYLLIFIIF*YERIKYYNY 583
           DK  +   K  +CSI K+ +   SNG S     LL+ I+     IKYY Y
Sbjct: 476 DKSFLKSLKSFLCSISKLENRYLSNGHSATLSDLLLGIL---SEIKYYEY 522


>SPBC21C3.07c |||actin binding methyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 281

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 9/36 (25%), Positives = 18/36 (50%)
 Frame = +3

Query: 339 LIKRKNYLRDNSVIFFFSSNKKKSLRPRCWIKIKFK 446
           ++    Y+R +       + KK+    RCW++ KF+
Sbjct: 245 ILSENFYIRGDGTRVLIVNRKKRVKMYRCWLQAKFQ 280


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,994,719
Number of Sequences: 5004
Number of extensions: 32708
Number of successful extensions: 45
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)