Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120856.seq
         (636 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23D3.01 |||PWWP domain protein|Schizosaccharomyces pombe|chr...    35   0.009
SPAC227.17c |||conserved protein |Schizosaccharomyces pombe|chr ...    28   1.3  
SPBC29A3.13 |||PWWP domain protein|Schizosaccharomyces pombe|chr...    27   1.7  
SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr...    27   3.0  
SPBC29A3.18 |cyt1||cytochrome c1|Schizosaccharomyces pombe|chr 2...    26   5.2  
SPCC63.12c |||20S proteasome component beta 3|Schizosaccharomyce...    25   9.1  

>SPAC23D3.01 |||PWWP domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 407

 Score = 35.1 bits (77), Expect = 0.009
 Identities = 11/23 (47%), Positives = 18/23 (78%)
 Frame = +3

Query: 99  REYKSGDFIFAKVKGYPAWPARV 167
           + YK+G+++ AK+  +P WPARV
Sbjct: 59  KSYKNGEYVLAKMSSFPWWPARV 81


>SPAC227.17c |||conserved protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 121

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = -2

Query: 218 FTSSIEIYKIFLSIQSLYPSWPCWISFNFSKYKVSRLVFSYFFAHFQY-NYGRCR 57
           F    E+ KI L ++   P  PC + + F +  +   VFS    +++Y  Y RC+
Sbjct: 13  FGQYAELDKI-LDLKKGIPEDPCSLQYYFDQMAMCLTVFSQMNHYYRYGEYNRCK 66


>SPBC29A3.13 |||PWWP domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 359

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +3

Query: 114 GDFIFAKVKGYPAWPARVQR 173
           GD I  K  GYP WPA + R
Sbjct: 53  GDRILVKAPGYPWWPALLLR 72


>SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 568

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +3

Query: 81  KMGKKVREYKSGDFIFAKVKGYPAWPARV 167
           K  ++V  YK G  +  K+ G+P WP+ V
Sbjct: 116 KQSERVN-YKPGMRVLTKMSGFPWWPSMV 143


>SPBC29A3.18 |cyt1||cytochrome c1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 307

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 16/45 (35%), Positives = 26/45 (57%)
 Frame = +3

Query: 117 DFIFAKVKGYPAWPARVQRLNGKKYFVYFYGTGEIANLPPNMIFD 251
           D+I++ + GY   PA V+  +G  +  +F GT +IA   P  +FD
Sbjct: 190 DYIYSLLTGYTEPPAGVEVPDGMNFNPFFPGT-QIAMARP--LFD 231


>SPCC63.12c |||20S proteasome component beta 3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 204

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = -3

Query: 142 PLTLANIKSPDLYSLTFLPIFSITMAA 62
           P T AN+ S  LY   F P FS  + A
Sbjct: 84  PKTFANLVSSTLYEKRFGPYFSFPVVA 110


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,358,449
Number of Sequences: 5004
Number of extensions: 43119
Number of successful extensions: 102
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)