Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120856.seq
         (636 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_03_0009 - 13691820-13691900,13693576-13693719                       44   8e-05
08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,336...    44   1e-04
07_03_1530 + 27502546-27502671,27503487-27503561,27504670-275047...    36   4e-04
05_03_0389 - 13409848-13409964,13410049-13410114,13410209-134103...    29   4.1  
05_01_0351 + 2750253-2751042,2751951-2751958,2752122-2752149,275...    28   5.4  
09_03_0130 - 12609417-12610462,12610786-12611040,12611139-126112...    28   7.1  
07_03_1788 + 29523216-29524867,29525048-29525075                       28   7.1  
05_05_0134 + 22619297-22619801,22619879-22621960,22622067-22623718     28   7.1  

>03_03_0009 - 13691820-13691900,13693576-13693719
          Length = 74

 Score = 44.4 bits (100), Expect = 8e-05
 Identities = 21/47 (44%), Positives = 29/47 (61%), Gaps = 7/47 (14%)
 Frame = +3

Query: 102 EYKSGDFIFAKVKGYPAWPARV-------QRLNGKKYFVYFYGTGEI 221
           ++K GD + AK+KG+PAWPA +       Q    KK  VYFYGT ++
Sbjct: 28  QWKVGDLVLAKMKGFPAWPAMISEPEQWGQTSVKKKILVYFYGTKQM 74


>08_01_0003 +
           30085-30195,30289-30365,31080-31136,31668-33560,
           33643-34147,34250-34358,34436-34548,34619-34806,
           35481-36129,36169-36691,36760-36911,37042-37141,
           37301-37416
          Length = 1530

 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 23/54 (42%), Positives = 30/54 (55%), Gaps = 7/54 (12%)
 Frame = +3

Query: 81  KMGKKVREYKSGDFIFAKVKGYPAWPARVQRLNG-------KKYFVYFYGTGEI 221
           K  K   + + GD + AKVKGYP WPA+V +          +K FV F+GT EI
Sbjct: 10  KAHKWTTQPQLGDLVLAKVKGYPPWPAKVSKPEDWDQMPVPRKVFVVFFGTREI 63


>07_03_1530 +
           27502546-27502671,27503487-27503561,27504670-27504746,
           27505576-27507522,27508478-27508946,27509898-27510079,
           27510746-27511208,27511295-27511691,27511810-27511937,
           27512106-27512273,27512452-27512559,27512830-27512838
          Length = 1382

 Score = 35.9 bits (79), Expect(2) = 4e-04
 Identities = 12/20 (60%), Positives = 17/20 (85%)
 Frame = +3

Query: 102 EYKSGDFIFAKVKGYPAWPA 161
           ++K GD + AK+KG+PAWPA
Sbjct: 22  QWKVGDLVLAKMKGFPAWPA 41



 Score = 25.0 bits (52), Expect(2) = 4e-04
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = +3

Query: 183 KKYFVYFYGTGEIA 224
           KK  VYFYGT +IA
Sbjct: 81  KKLLVYFYGTKQIA 94


>05_03_0389 -
           13409848-13409964,13410049-13410114,13410209-13410325,
           13410822-13410893,13410979-13411258,13411528-13411730,
           13412230-13412316,13412705-13412758,13413042-13413221,
           13414402-13414576,13414628-13414918,13414923-13415344
          Length = 687

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 19/45 (42%), Positives = 24/45 (53%)
 Frame = +3

Query: 117 DFIFAKVKGYPAWPARVQRLNGKKYFVYFYGTGEIANLPPNMIFD 251
           +++FA + GY   PA VQ   G  Y  YF G G IA   P M+ D
Sbjct: 571 NYVFALLTGYRDPPAGVQIREGLHYNPYFPG-GAIA--MPKMLID 612


>05_01_0351 +
           2750253-2751042,2751951-2751958,2752122-2752149,
           2754692-2754775,2755780-2757548
          Length = 892

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 99  REYKSGDFIFAKVKGYPAWPARV 167
           R  + GD ++ KVK +P WP  V
Sbjct: 42  RGVRFGDMVWGKVKSHPWWPGHV 64


>09_03_0130 -
           12609417-12610462,12610786-12611040,12611139-12611253,
           12611376-12611428,12611854-12612114,12612252-12612302,
           12612412-12612660,12612779-12613007,12613292-12613666
          Length = 877

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 17/64 (26%), Positives = 26/64 (40%), Gaps = 4/64 (6%)
 Frame = -3

Query: 232 GRFAISPVP*KYTKYFFPFNLCTRAGHAG----YPLTLANIKSPDLYSLTFLPIFSITMA 65
           G F++  +   +T   FP  L    G A     YP  +  I    +  + F P+F I   
Sbjct: 398 GHFSVKSIQVAFTAVVFPCLLIAYMGQAAYLMKYPFAVERIFYDSVPEILFWPVFVIATL 457

Query: 64  AAAV 53
           AA +
Sbjct: 458 AAMI 461


>07_03_1788 + 29523216-29524867,29525048-29525075
          Length = 559

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
 Frame = +3

Query: 105 YKSGDFIFAKVKGYPAWPARV--QRLNGKKYFVYFYGTGEIA 224
           +  GD ++ K   +PAWP  V      G +  V F+G   +A
Sbjct: 61  FAPGDLVWGKKLSHPAWPGEVISAAPTGAQLLVSFFGDKALA 102


>05_05_0134 + 22619297-22619801,22619879-22621960,22622067-22623718
          Length = 1412

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +3

Query: 102 EYKSGDFIFAKVKGYPAWPARV 167
           E++  D ++ KVK +P WP  +
Sbjct: 247 EFRVSDLVWGKVKSHPWWPGEI 268


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,969,011
Number of Sequences: 37544
Number of extensions: 260467
Number of successful extensions: 675
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 665
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 673
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)