Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120856.seq
         (636 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2180| Best HMM Match : DUF293 (HMM E-Value=4.2)                     30   1.8  
SB_17045| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.8  
SB_14919| Best HMM Match : MAM (HMM E-Value=0)                         29   2.4  
SB_51468| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.2  
SB_47268| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.2  
SB_18416| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.2  
SB_55750| Best HMM Match : PWWP (HMM E-Value=6.4e-07)                  28   7.3  
SB_47442| Best HMM Match : Linker_histone (HMM E-Value=1.4e-36)        27   9.7  
SB_46930| Best HMM Match : PWWP (HMM E-Value=0.017)                    27   9.7  
SB_18456| Best HMM Match : Syja_N (HMM E-Value=1.9e-12)                27   9.7  

>SB_2180| Best HMM Match : DUF293 (HMM E-Value=4.2)
          Length = 289

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 78  LKMGKKVREYKSGDFIFAKVKGYPAW 155
           +KMGK+V+  K GDF+     G  +W
Sbjct: 114 IKMGKEVKGVKEGDFVILAESGLGSW 139


>SB_17045| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1146

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 7/38 (18%)
 Frame = +3

Query: 117 DFIFAKVKGYPAWPARV---QRLN----GKKYFVYFYG 209
           D ++AK++G+P WPA V    RLN      +Y V F+G
Sbjct: 62  DVVWAKMEGHPIWPAIVCNHPRLNIHARSNEYHVQFFG 99


>SB_14919| Best HMM Match : MAM (HMM E-Value=0)
          Length = 1332

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +2

Query: 326 EHDFANNVPLEQVVGLSIGESPNPN 400
           EH+ + + PL + VGL+IG SP  N
Sbjct: 739 EHEISPDTPLPRAVGLNIGISPGVN 763


>SB_51468| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1626

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 7/21 (33%), Positives = 16/21 (76%)
 Frame = +3

Query: 105  YKSGDFIFAKVKGYPAWPARV 167
            + +GD ++A+ +G P+WP ++
Sbjct: 1057 FSTGDVVWAQARGLPSWPGQI 1077


>SB_47268| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 722

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +3

Query: 105 YKSGDFIFAKVKGYPAWPARVQ 170
           + +G  ++AK+ GYP WPA ++
Sbjct: 153 FPTGAIVWAKLAGYPWWPAMME 174


>SB_18416| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 314

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 17/44 (38%), Positives = 20/44 (45%)
 Frame = -2

Query: 635 FGLFNWVWAGVFTEFCFGFSALLVFLHRSQGPQYHLNLLRPVYY 504
           F L  WV +  F  FC   +  +V LH  QG    LNL R   Y
Sbjct: 80  FRLGKWVSSFYFAAFCITVANNIVALHMIQGINSGLNLHRITDY 123


>SB_55750| Best HMM Match : PWWP (HMM E-Value=6.4e-07)
          Length = 532

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +3

Query: 114 GDFIFAKVKGYPAWPARVQRL 176
           G  I+ KV G+P WP RV  +
Sbjct: 443 GSIIWGKVHGHPWWPGRVMAI 463


>SB_47442| Best HMM Match : Linker_histone (HMM E-Value=1.4e-36)
          Length = 650

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +1

Query: 562 KTKRAENPKQNSVKTPAQTQLKRPK 636
           K K A  PK+ SVK PA  + K PK
Sbjct: 569 KKKPAAKPKKASVKKPAAKKAKSPK 593


>SB_46930| Best HMM Match : PWWP (HMM E-Value=0.017)
          Length = 237

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = +3

Query: 81  KMGKKVREYKSGDFIFAKVKGYPAWPARVQRLNGKKYF-VYFY 206
           K  K  +E+++GD I AK +    +PA++ ++N    F V FY
Sbjct: 76  KEEKTQQEWRNGDRILAKWQDCKFYPAKILKINTDGSFEVLFY 118


>SB_18456| Best HMM Match : Syja_N (HMM E-Value=1.9e-12)
          Length = 660

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 13/50 (26%), Positives = 20/50 (40%)
 Frame = -3

Query: 172 LCTRAGHAGYPLTLANIKSPDLYSLTFLPIFSITMAAAAVFYVITAQHLF 23
           +C       YP  + N   PD+   T     ++    A V Y++T  H F
Sbjct: 89  MCKAIESGKYPFVMCNFAPPDMVGHTGKYDAAVIACTATVPYIMTGGHKF 138


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,276,158
Number of Sequences: 59808
Number of extensions: 298447
Number of successful extensions: 743
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 743
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1596754500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)