Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120856.seq
         (636 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97193-6|AAV34803.1|  780|Caenorhabditis elegans Hypothetical pr...    46   2e-05
U97193-5|AAV34804.1|  783|Caenorhabditis elegans Hypothetical pr...    46   2e-05
Z75533-7|CAA99820.1|  285|Caenorhabditis elegans Hypothetical pr...    29   2.8  
Z81587-2|CAB04702.2|  339|Caenorhabditis elegans Hypothetical pr...    28   4.9  
U41990-2|AAA83339.2| 1963|Caenorhabditis elegans Non-muscle myos...    27   8.5  

>U97193-6|AAV34803.1|  780|Caenorhabditis elegans Hypothetical
           protein C06A5.3a protein.
          Length = 780

 Score = 46.0 bits (104), Expect = 2e-05
 Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 4/58 (6%)
 Frame = +3

Query: 105 YKSGDFIFAKVKGYPAWPARV----QRLNGKKYFVYFYGTGEIANLPPNMIFDYQKTR 266
           ++ GD I+AK+KG+P WPA+V    +    ++  V F+GT E + + PN + DY   R
Sbjct: 13  FQPGDLIWAKMKGFPPWPAKVLERSEDAPARRIPVMFFGTLETSFMKPNDLSDYLPNR 70


>U97193-5|AAV34804.1|  783|Caenorhabditis elegans Hypothetical
           protein C06A5.3b protein.
          Length = 783

 Score = 46.0 bits (104), Expect = 2e-05
 Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 4/58 (6%)
 Frame = +3

Query: 105 YKSGDFIFAKVKGYPAWPARV----QRLNGKKYFVYFYGTGEIANLPPNMIFDYQKTR 266
           ++ GD I+AK+KG+P WPA+V    +    ++  V F+GT E + + PN + DY   R
Sbjct: 13  FQPGDLIWAKMKGFPPWPAKVLERSEDAPARRIPVMFFGTLETSFMKPNDLSDYLPNR 70


>Z75533-7|CAA99820.1|  285|Caenorhabditis elegans Hypothetical
           protein C54G4.8 protein.
          Length = 285

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 18/45 (40%), Positives = 26/45 (57%)
 Frame = +3

Query: 117 DFIFAKVKGYPAWPARVQRLNGKKYFVYFYGTGEIANLPPNMIFD 251
           D++F+ + GY   PA V+  +GK Y  YF G G I+   P  +FD
Sbjct: 161 DYVFSLLTGYLEAPAGVKVDDGKAYNPYFPG-GIIS--MPQQLFD 202


>Z81587-2|CAB04702.2|  339|Caenorhabditis elegans Hypothetical
           protein T06G6.2 protein.
          Length = 339

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 17/58 (29%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
 Frame = -2

Query: 206 IEIYKIFLSIQSLYPSWPCWISFNFSKYKVSRLVF---SYFFAHFQYNYGRCRRVLCY 42
           I I +I+ SI  ++ S PC + F+F++ +V   V+   +YF  +  ++    R + CY
Sbjct: 84  IRIRQIYRSI--VFASEPCRLPFHFTECEVELFVYYLTTYFSTYSVFSLAFDRLISCY 139


>U41990-2|AAA83339.2| 1963|Caenorhabditis elegans Non-muscle myosin
           protein 1 protein.
          Length = 1963

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 14/55 (25%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = +2

Query: 206 WNW*NCKSTTKHDIRLSENKDKFLTKTVKRRDFNDGVKQIEHDF-ANNVPLEQVV 367
           W W    +  K  ++++   D+   K  + R   + + ++EHDF  N   L+QV+
Sbjct: 831 WQWWRLFTKVKPLLQVTRTDDEIRAKDDELRATKERLLKMEHDFRENEKKLDQVI 885


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,001,656
Number of Sequences: 27780
Number of extensions: 239633
Number of successful extensions: 831
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 740
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 829
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)