Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120856.seq
(636 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g08230.1 68418.m00965 PWWP domain-containing protein putative... 55 5e-08
At5g23150.1 68418.m02707 PWWP domain-containing protein identica... 52 3e-07
At2g48160.1 68415.m06031 PWWP domain-containing protein 50 2e-06
At3g63070.1 68416.m07084 PWWP domain-containing protein putative... 48 5e-06
At5g40340.1 68418.m04894 PWWP domain-containing protein KED, Nic... 30 1.1
At5g07680.2 68418.m00880 no apical meristem (NAM) family protein... 29 2.6
At5g07680.1 68418.m00879 no apical meristem (NAM) family protein... 29 2.6
At3g21210.1 68416.m02680 universal stress protein (USP) family p... 29 2.6
At3g05430.1 68416.m00595 PWWP domain-containing protein contains... 28 4.5
At2g02220.1 68415.m00159 leucine-rich repeat transmembrane prote... 28 4.5
At5g27650.1 68418.m03313 PWWP domain-containing protein hypothet... 28 6.0
At5g15680.1 68418.m01834 expressed protein 28 6.0
At2g31650.1 68415.m03864 trithorax 1 (ATX-1) (TRX1) identical to... 28 6.0
At1g31120.1 68414.m03808 potassium transporter family protein si... 28 6.0
At1g07210.1 68414.m00767 30S ribosomal protein S18 family contai... 28 6.0
At5g43870.1 68418.m05363 expressed protein 27 7.9
At4g10370.1 68417.m01702 DC1 domain-containing protein contains ... 27 7.9
At3g58490.1 68416.m06519 phosphatidic acid phosphatase family pr... 27 7.9
At1g11200.1 68414.m01283 expressed protein contains Pfam profile... 27 7.9
>At5g08230.1 68418.m00965 PWWP domain-containing protein putative
transcription factor (HUA2) - Arabidopsis thaliana,
EMBL:AF116556
Length = 1445
Score = 54.8 bits (126), Expect = 5e-08
Identities = 26/54 (48%), Positives = 35/54 (64%), Gaps = 7/54 (12%)
Frame = +3
Query: 96 VREYKSGDFIFAKVKGYPAWPARV-------QRLNGKKYFVYFYGTGEIANLPP 236
+ E + GD + AKVKG+PAWPA++ Q + KK+FV FYGTGEI + P
Sbjct: 15 IGEMRLGDLVLAKVKGFPAWPAKIGQPEDWNQAPDPKKHFVQFYGTGEIGFVTP 68
>At5g23150.1 68418.m02707 PWWP domain-containing protein identical
to cDNA putative transcription factor (HUA2) GI:4868119;
contains Pfam profile PF00855: PWWP domain
Length = 1392
Score = 52.0 bits (119), Expect = 3e-07
Identities = 25/48 (52%), Positives = 32/48 (66%), Gaps = 7/48 (14%)
Frame = +3
Query: 114 GDFIFAKVKGYPAWPARVQR-------LNGKKYFVYFYGTGEIANLPP 236
GD + AKVKG+PAWPA++ R + KKYFV F+GT EIA + P
Sbjct: 21 GDLVLAKVKGFPAWPAKISRPEDWDRAPDPKKYFVQFFGTEEIAFVAP 68
>At2g48160.1 68415.m06031 PWWP domain-containing protein
Length = 1366
Score = 49.6 bits (113), Expect = 2e-06
Identities = 27/66 (40%), Positives = 37/66 (56%), Gaps = 7/66 (10%)
Frame = +3
Query: 99 REYKSGDFIFAKVKGYPAWPARVQR-------LNGKKYFVYFYGTGEIANLPPNMIFDYQ 257
R+ K GD + AKVKG+PAWPA V + KK FV+F+GT +IA P + +
Sbjct: 20 RKRKVGDLVLAKVKGFPAWPAVVSEPEEWDASPDSKKVFVHFFGTQQIAFCNPGDVEAFT 79
Query: 258 KTRTSS 275
+ R S
Sbjct: 80 EERKQS 85
>At3g63070.1 68416.m07084 PWWP domain-containing protein putative
transcription factor HUA2, Arabidopsis thaliana,
EMBL:AF116556
Length = 1347
Score = 48.0 bits (109), Expect = 5e-06
Identities = 24/49 (48%), Positives = 31/49 (63%), Gaps = 7/49 (14%)
Frame = +3
Query: 99 REYKSGDFIFAKVKGYPAWPARVQR-------LNGKKYFVYFYGTGEIA 224
RE+K GD + AKVKG+PAWPA V + KK V+F+GT +IA
Sbjct: 20 REWKVGDLVLAKVKGFPAWPAVVDEPEKWGHSADSKKVTVHFFGTQQIA 68
>At5g40340.1 68418.m04894 PWWP domain-containing protein KED,
Nicotiana tabacum, EMBL:AB009883
Length = 1008
Score = 30.3 bits (65), Expect = 1.1
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +3
Query: 105 YKSGDFIFAKVKGYPAWPARV 167
Y GDF++ K+K +P WP ++
Sbjct: 125 YCVGDFVWGKIKNHPWWPGQI 145
>At5g07680.2 68418.m00880 no apical meristem (NAM) family protein
contains Pfam PF02365 : No apical meristem (NAM)
protein; similar to cup-shaped cotyledon CUC2
(GI:1944132) [Arabidopsis thaliana]
Length = 315
Score = 29.1 bits (62), Expect = 2.6
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +2
Query: 305 NDGVKQIEHDFANNVPLEQVVGLSIGESPNP 397
N + I+ DF +PL Q L+I ES NP
Sbjct: 216 NPSLSSIQPDFLQMIPLYQPQSLNISESSNP 246
>At5g07680.1 68418.m00879 no apical meristem (NAM) family protein
contains Pfam PF02365 : No apical meristem (NAM)
protein; similar to cup-shaped cotyledon CUC2
(GI:1944132) [Arabidopsis thaliana]
Length = 329
Score = 29.1 bits (62), Expect = 2.6
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +2
Query: 305 NDGVKQIEHDFANNVPLEQVVGLSIGESPNP 397
N + I+ DF +PL Q L+I ES NP
Sbjct: 230 NPSLSSIQPDFLQMIPLYQPQSLNISESSNP 260
>At3g21210.1 68416.m02680 universal stress protein (USP) family
protein / DC1 domain-containing protein contains Pfam
profiles PF03107: DC1 domain, PF00582: universal stress
protein family
Length = 686
Score = 29.1 bits (62), Expect = 2.6
Identities = 17/66 (25%), Positives = 27/66 (40%)
Frame = -2
Query: 224 CNFTSSIEIYKIFLSIQSLYPSWPCWISFNFSKYKVSRLVFSYFFAHFQYNYGRCRRVLC 45
CNFT + I S+ + P ++ + + + H + N G CR LC
Sbjct: 517 CNFTLDVSCASIAESLIHRFHPHPIYLIHESTAQEFCSIC-GQLIGH-RLNCGECRFALC 574
Query: 44 YHCTTL 27
+ C TL
Sbjct: 575 FGCATL 580
>At3g05430.1 68416.m00595 PWWP domain-containing protein contains
Pfam profile:PF00855 PWWP domain
Length = 965
Score = 28.3 bits (60), Expect = 4.5
Identities = 8/21 (38%), Positives = 15/21 (71%)
Frame = +3
Query: 105 YKSGDFIFAKVKGYPAWPARV 167
++ GD ++ KVK +P WP ++
Sbjct: 133 FEVGDMVWGKVKSHPWWPGQI 153
>At2g02220.1 68415.m00159 leucine-rich repeat transmembrane protein
kinase, putative
Length = 1008
Score = 28.3 bits (60), Expect = 4.5
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = -2
Query: 185 LSIQSLYPSWPCWISFNFSKYKVSRLVFSYFFAHFQYNYGRC 60
LS S P I N ++ +V +L +YF +F +G+C
Sbjct: 154 LSSNKFNGSLPSHICHNSTQIRVVKLAVNYFAGNFTSGFGKC 195
>At5g27650.1 68418.m03313 PWWP domain-containing protein
hypothetical protein F22F7.12 - Arabidopsis thaliana,
EMBL:AC009606
Length = 1072
Score = 27.9 bits (59), Expect = 6.0
Identities = 8/21 (38%), Positives = 14/21 (66%)
Frame = +3
Query: 105 YKSGDFIFAKVKGYPAWPARV 167
++ GD ++ KVK +P WP +
Sbjct: 171 FEVGDLVWGKVKSHPWWPGHI 191
>At5g15680.1 68418.m01834 expressed protein
Length = 2151
Score = 27.9 bits (59), Expect = 6.0
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = +3
Query: 201 FYGTGEIANLPPNMIFDYQKTRTSS*LKLLKEGI 302
FY + ++ PPN I+DY + TS L +L++G+
Sbjct: 341 FYLSVYASSQPPNRIWDYLDSVTSQLLTVLRKGM 374
>At2g31650.1 68415.m03864 trithorax 1 (ATX-1) (TRX1) identical to
trithorax-like protein 1 GI:12659210 from [Arabidopsis
thaliana]; characterized in Alvarez-Venegas R,et al,
ATX-1, an Arabidopsis Homolog of Trithorax, Activates
Flower Homeotic Genes.(Curr Biol. 2003 Apr
15;13(8):627-37 PMID: 12699618); contains Pfam profiles
PF00856: SET domain, PF00855: PWWP domain, PF00628,
PHD-finger; identical to cDNA trithorax-like protein 1
(TRX1) GI:12659209
Length = 1062
Score = 27.9 bits (59), Expect = 6.0
Identities = 8/21 (38%), Positives = 16/21 (76%)
Frame = +3
Query: 99 REYKSGDFIFAKVKGYPAWPA 161
++++ GD ++AK+ G+ WPA
Sbjct: 297 QDFEPGDIVWAKLAGHAMWPA 317
>At1g31120.1 68414.m03808 potassium transporter family protein
similar to HAK2 [Hordeum vulgare] GI:7108599, potassium
transporter [Arabidopsis thaliana]
gi|2654088|gb|AAB87687; KUP/HAK/KT Transporter family
member, PMID:11500563; contains Pfam profile PF02705: K+
potassium transporter
Length = 796
Score = 27.9 bits (59), Expect = 6.0
Identities = 23/76 (30%), Positives = 32/76 (42%), Gaps = 4/76 (5%)
Frame = -3
Query: 226 FAISPVP*KYTKYFFPFNLCTRAGHAGY----PLTLANIKSPDLYSLTFLPIFSITMAAA 59
F +S V +T FP L +G A Y P + + + SL + P+F I AAA
Sbjct: 322 FPVSAVQFAFTVIVFPCLLLAYSGQAAYLRKYPHHVEDAFYQSIPSLVYWPMFIIATAAA 381
Query: 58 AVFYVITAQHLFAAKK 11
V T F+ K
Sbjct: 382 IVASQATISATFSLIK 397
>At1g07210.1 68414.m00767 30S ribosomal protein S18 family contains
Pfam profile: PF01084 ribosomal protein S18; similar to
30S ribosomal protein S18 (SP:P80382) {Thermus
thermophilus}
Length = 261
Score = 27.9 bits (59), Expect = 6.0
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +1
Query: 502 K*YTGRRRFR*YWGPCDR*RKTKRAENPKQNSVKTPAQTQ 621
K Y+ R F WG + R K+ +NP+QN+ K+ T+
Sbjct: 130 KEYSFRPDFNNSWGMNNFPRMQKQMQNPRQNNSKSEVTTE 169
>At5g43870.1 68418.m05363 expressed protein
Length = 453
Score = 27.5 bits (58), Expect = 7.9
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +3
Query: 108 KSGDFIFAKVKGYPAWPARVQRLNGKKYFVYF 203
K + + VKG PAWP R + L G + YF
Sbjct: 382 KKKNVVVGLVKGLPAWPGR-EMLEGGENLRYF 412
>At4g10370.1 68417.m01702 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 687
Score = 27.5 bits (58), Expect = 7.9
Identities = 9/25 (36%), Positives = 14/25 (56%)
Frame = -2
Query: 101 SYFFAHFQYNYGRCRRVLCYHCTTL 27
+Y + + N C +LC+HC TL
Sbjct: 503 TYEYVNLNLNCLECDYILCFHCATL 527
>At3g58490.1 68416.m06519 phosphatidic acid phosphatase family
protein / PAP2 family protein similar to
sphingosine-1-phosphate phosphohydrolase from [Mus
musculus] GI:9623190, [Homo sapiens] GI:23345324;
contains Pfam profile PF01569: PAP2 superfamily
Length = 416
Score = 27.5 bits (58), Expect = 7.9
Identities = 20/61 (32%), Positives = 28/61 (45%)
Frame = -1
Query: 231 VDLQFHQFHRNIQNISFHSIFVPELAMLDIL*L*QI*SLPTCILLLFCPFSV*LWPLPPC 52
V + QFH + IF PEL + L + +PT +L+ FC S+ W LP
Sbjct: 283 VQQTYSQFHHE----AAPRIFSPELPISSYLGRVMV-GIPTILLVKFCSKSLAKWTLPMV 337
Query: 51 S 49
S
Sbjct: 338 S 338
>At1g11200.1 68414.m01283 expressed protein contains Pfam profile
PF03619: Domain of unknown function
Length = 295
Score = 27.5 bits (58), Expect = 7.9
Identities = 14/45 (31%), Positives = 17/45 (37%)
Frame = -2
Query: 233 W*ICNFTSSIEIYKIFLSIQSLYPSWPCWISFNFSKYKVSRLVFS 99
W C I I L I +YP W WI VS ++S
Sbjct: 149 WQFCIIRPVCSILMITLQILGIYPVWLSWIFTAILNVSVSLALYS 193
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,201,313
Number of Sequences: 28952
Number of extensions: 218422
Number of successful extensions: 633
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 613
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 629
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1305036432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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