Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120855.seq
         (634 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q54YV2 Cluster: Putative uncharacterized protein; n=1; ...    35   1.4  
UniRef50_Q6ZSJ0 Cluster: CDNA FLJ45488 fis, clone BRTHA2003759; ...    34   3.3  
UniRef50_Q4YBP9 Cluster: Putative uncharacterized protein; n=3; ...    33   4.3  

>UniRef50_Q54YV2 Cluster: Putative uncharacterized protein; n=1;
           Dictyostelium discoideum AX4|Rep: Putative
           uncharacterized protein - Dictyostelium discoideum AX4
          Length = 189

 Score = 35.1 bits (77), Expect = 1.4
 Identities = 16/44 (36%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
 Frame = -3

Query: 287 NSSHKNNTNQIKTDVNNIYH*TYTIVKHEILYNNNFK-SIFEFV 159
           N+++ NN N   T +N+ Y+    + KH  +YNNN K S++E++
Sbjct: 40  NNNNNNNNNNFNTAINDEYY-FQNLNKHNNIYNNNNKNSLYEYL 82


>UniRef50_Q6ZSJ0 Cluster: CDNA FLJ45488 fis, clone BRTHA2003759;
           n=2; Homo sapiens|Rep: CDNA FLJ45488 fis, clone
           BRTHA2003759 - Homo sapiens (Human)
          Length = 130

 Score = 33.9 bits (74), Expect = 3.3
 Identities = 20/63 (31%), Positives = 33/63 (52%)
 Frame = +1

Query: 109 IF*YVYNLSINIYIYFNTNSNIDLKLLLYNISCFTIVYV*W*ILFTSVLIWFVLFL*LEF 288
           I+ YVY + I +YIYF   + I L + +Y   C  I    +  +FT + I+  +F+ L  
Sbjct: 25  IYIYVY-VYIYLYIYFYIFTYIYLYIFIYIYICLYIYLYIYLYIFTYIYIYLHIFIYLHI 83

Query: 289 YAY 297
           + Y
Sbjct: 84  FIY 86


>UniRef50_Q4YBP9 Cluster: Putative uncharacterized protein; n=3;
           Plasmodium (Vinckeia)|Rep: Putative uncharacterized
           protein - Plasmodium berghei
          Length = 358

 Score = 33.5 bits (73), Expect = 4.3
 Identities = 28/102 (27%), Positives = 49/102 (48%)
 Frame = +1

Query: 4   FLIFVAIRFFYVIYLITPECHVSNIETVI**CSKNIF*YVYNLSINIYIYFNTNSNIDLK 183
           FL  +   FF+  Y+I  +  ++ I  ++     N F  +   ++  YIYF    N  LK
Sbjct: 210 FLFVIYYIFFFFHYII--DIQINQIFNIV----VNTFIVIIITAMLCYIYFLKTRNKKLK 263

Query: 184 LLLYNISCFTIVYV*W*ILFTSVLIWFVLFL*LEFYAYHKIY 309
            +++ I+ +TI+     I F +VL W  ++  L F    K+Y
Sbjct: 264 KIIFYITTYTILLYCLHI-FNTVLHWINIY--LNFTMSKKLY 302


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 471,437,338
Number of Sequences: 1657284
Number of extensions: 7714357
Number of successful extensions: 20392
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 18524
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20306
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 46881492319
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)