Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120855.seq
         (634 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    22   4.9  
AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory recept...    22   4.9  
EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    21   6.5  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   8.6  

>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +3

Query: 27  FFLCNIFNNARMPCK*H*NCDLVMFKK 107
           FF  +I  NA   CK   NC++ M+ +
Sbjct: 211 FFRRSITKNAVYQCKYGNNCEIDMYMR 237


>AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory receptor
           candidate 27 protein.
          Length = 346

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = +3

Query: 174 RFEIIVV*YFMFHYSICLVVDIIYVGFNLVCV 269
           R E+ ++ +F F Y   +V D++Y      C+
Sbjct: 145 RREMPLIVWFPFDYKQPVVFDLVYFILAFACI 176


>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +1

Query: 142 IYIYFNTNSNIDLKLLLY 195
           IY+Y+   SN+    LLY
Sbjct: 22  IYLYWQQTSNLTTSKLLY 39


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 7/23 (30%), Positives = 15/23 (65%)
 Frame = -1

Query: 313  VSKFYDTHKTPVTKITQTKLKPT 245
            + ++Y  +  PV+   +T++KPT
Sbjct: 1230 IVEYYTVYYKPVSTDDKTEVKPT 1252


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,370
Number of Sequences: 336
Number of extensions: 2512
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16292796
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)