Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120854.seq
         (645 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1322.12c |bub1||serine/threonine protein kinase Bub1|Schizos...    27   2.3  
SPBC3D6.07 |gpi3||pig-A|Schizosaccharomyces pombe|chr 2|||Manual       26   4.0  
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa...    26   4.0  
SPCC16A11.13 |usp106|luc7|U1 snRNP-associated protein Usp106|Sch...    25   9.3  

>SPCC1322.12c |bub1||serine/threonine protein kinase
           Bub1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1044

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 14/53 (26%), Positives = 29/53 (54%)
 Frame = +2

Query: 149 SPLLSHVKFVYAPDQVIESSVTKTKFRTYYAGSEVGSPGRSIPRRGXLESTVE 307
           +P  ++   +Y+P++ ++ S T +K  TY   +E+ +  R  P    L ST++
Sbjct: 455 TPSKNYPSKIYSPNKNLDFSHTASKAETYKNSNELENVKREQPFSELLPSTLQ 507


>SPBC3D6.07 |gpi3||pig-A|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 456

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = -3

Query: 148 GDLSVEVAQLQRRV*GLVDVSRKTVVAERALAQELGIRILT 26
           G +   + QL +R   L+D+  K +V   A    +G+R LT
Sbjct: 11  GGIESHIFQLSQR---LIDLGHKVIVITHAYKDRVGVRYLT 48


>SPCC18B5.03 |wee1||dual specificity protein kinase
           Wee1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 877

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -2

Query: 266 CPATPPRTPRSTYGTWSW*HCSRSPDPVR 180
           CPATP R P +   T S     R P P++
Sbjct: 489 CPATPTRNPFAFENTVSIHMDGRQPSPIK 517


>SPCC16A11.13 |usp106|luc7|U1 snRNP-associated protein
           Usp106|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 264

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -3

Query: 445 VEQLLDSEIGP*TFKG*ITFLDGYRNFDFLCDFFPQEV 332
           +EQL+ S +   T +G + F D      FLC   P ++
Sbjct: 9   IEQLMGSNLSNFTSRGLVHFTDRKVCRSFLCGICPHDI 46


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,110,962
Number of Sequences: 5004
Number of extensions: 33230
Number of successful extensions: 101
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)