Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120854.seq
         (645 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0073 - 27504169-27504882,27504989-27505161,27505302-275054...    31   1.0  
11_06_0207 + 21214631-21216121                                         27   9.7  
09_04_0625 - 19044775-19045078,19045178-19045382,19045534-190461...    27   9.7  

>05_07_0073 -
           27504169-27504882,27504989-27505161,27505302-27505485,
           27505604-27505675,27506173-27506733,27506846-27507145
          Length = 667

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +2

Query: 83  ARHIYEASDAALQLRDFYRQVSSPLLSHV 169
           A  +  A DA ++ RD+   + SPLLSHV
Sbjct: 470 AGEVASAEDATVRERDYIEPIKSPLLSHV 498


>11_06_0207 + 21214631-21216121
          Length = 496

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 17/54 (31%), Positives = 22/54 (40%)
 Frame = +3

Query: 33  MRIPSSCASARSATTVLRDTSTRPQTRRCSCATSTDRSPRLCCHMSNLSTHRIR 194
           +R  S C S RSA T LRD     Q   C   T+     ++ C  S +     R
Sbjct: 77  VRAGSVCQSWRSAYTSLRDMGQYKQQTPCLLYTTESSGEKVSCLYSLVEKRAFR 130


>09_04_0625 -
           19044775-19045078,19045178-19045382,19045534-19046168,
           19046334-19047391
          Length = 733

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -2

Query: 77  RCCGASTCARAWDPHPHRKQVKIS 6
           +CC A+ C R WD   H    KIS
Sbjct: 588 QCCSATGCERNWDIFHHIHSRKIS 611


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,778,462
Number of Sequences: 37544
Number of extensions: 251096
Number of successful extensions: 747
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 735
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 747
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)