Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120854.seq
         (645 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45592| Best HMM Match : Epimerase (HMM E-Value=1.4e-19)             29   4.3  
SB_55405| Best HMM Match : Bromodomain (HMM E-Value=5.5e-16)           28   7.5  
SB_4351| Best HMM Match : zf-B_box (HMM E-Value=1.3e-25)               28   7.5  

>SB_45592| Best HMM Match : Epimerase (HMM E-Value=1.4e-19)
          Length = 672

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +3

Query: 390 VIYPLNVYGPISLSSNCSTQAMPPTLL 470
           VI P  VYGP+   SNC++  +P  LL
Sbjct: 195 VINPGLVYGPVLQGSNCTSMEIPCRLL 221


>SB_55405| Best HMM Match : Bromodomain (HMM E-Value=5.5e-16)
          Length = 657

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 24/90 (26%), Positives = 44/90 (48%), Gaps = 7/90 (7%)
 Frame = +2

Query: 29  EDADPKLLRKCSLRNNGFARHIYEAS-DAALQLRDFYRQVSSPLLSHVKFVYAPDQV--- 196
           ++ D +L++K    N GF RH+ ++S D AL      +Q+SS + + +   Y  + V   
Sbjct: 142 QNKDLRLMQKILQHNYGFTRHVLKSSTDMALLYSK--KQLSSRIQNLLSLKYKVNPVAHS 199

Query: 197 -IESSVTKTKFRTYYA--GSEVGSPGRSIP 277
             E S+   K  +Y    GS +    +++P
Sbjct: 200 DFEFSMDAEKMSSYIGKLGSVITPADKAVP 229


>SB_4351| Best HMM Match : zf-B_box (HMM E-Value=1.3e-25)
          Length = 662

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 24/90 (26%), Positives = 44/90 (48%), Gaps = 7/90 (7%)
 Frame = +2

Query: 29  EDADPKLLRKCSLRNNGFARHIYEAS-DAALQLRDFYRQVSSPLLSHVKFVYAPDQVIES 205
           ++ D +L++K    N GF RH+ ++S D AL      +Q+SS + + +   Y  + V  S
Sbjct: 305 QNKDLRLMQKILQHNYGFTRHVLKSSTDMALLYSK--KQLSSRIQNLLSLKYKVNPVAHS 362

Query: 206 ----SVTKTKFRTYYA--GSEVGSPGRSIP 277
               S+   K  +Y    GS +    +++P
Sbjct: 363 DLKFSMDAEKMSSYIGKLGSVITPADKAVP 392


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,591,874
Number of Sequences: 59808
Number of extensions: 277541
Number of successful extensions: 2979
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2883
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2978
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1633044375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)