Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120854.seq
         (645 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82094-3|CAB05024.1| 2561|Caenorhabditis elegans Hypothetical pr...    29   2.1  
Z81120-8|CAB03348.1| 2561|Caenorhabditis elegans Hypothetical pr...    29   2.1  
AL110485-20|CAB60368.2|  600|Caenorhabditis elegans Hypothetical...    28   6.5  
U97002-3|AAB52263.1| 1085|Caenorhabditis elegans Hypothetical pr...    27   8.6  

>Z82094-3|CAB05024.1| 2561|Caenorhabditis elegans Hypothetical
           protein T12D8.1 protein.
          Length = 2561

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 20/58 (34%), Positives = 25/58 (43%)
 Frame = -1

Query: 411 RRSRGKSLFSTGTGTLIFFVIFFLRKWSFSSPQKASTVDSRXPRRGIDLPGDPTSDPA 238
           R+S   S  S+   +L  FV    R+ S   P       S  P RG D P  P SDP+
Sbjct: 103 RKSYHLSCDSSDVSSLNNFVCISCRRRSQMLPDDVMLSASARPSRGQDAPLSPFSDPS 160


>Z81120-8|CAB03348.1| 2561|Caenorhabditis elegans Hypothetical
           protein T12D8.1 protein.
          Length = 2561

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 20/58 (34%), Positives = 25/58 (43%)
 Frame = -1

Query: 411 RRSRGKSLFSTGTGTLIFFVIFFLRKWSFSSPQKASTVDSRXPRRGIDLPGDPTSDPA 238
           R+S   S  S+   +L  FV    R+ S   P       S  P RG D P  P SDP+
Sbjct: 103 RKSYHLSCDSSDVSSLNNFVCISCRRRSQMLPDDVMLSASARPSRGQDAPLSPFSDPS 160


>AL110485-20|CAB60368.2|  600|Caenorhabditis elegans Hypothetical
           protein Y46G5A.25 protein.
          Length = 600

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +3

Query: 78  VLRDTSTRPQTRRCSCATSTDRSPRLCCHMS 170
           +LRD + R   +R SC T    S  LC  MS
Sbjct: 84  ILRDQAKRAAMQRGSCETPVTNSANLCLGMS 114


>U97002-3|AAB52263.1| 1085|Caenorhabditis elegans Hypothetical
           protein K09H11.3 protein.
          Length = 1085

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
 Frame = +2

Query: 41  PKLLRKCSLRNNGFARHIYEASDAALQLRDFYRQVSSPLLSHVKFV--YAPDQVIESS 208
           P L R+ S  +  +++      D   ++R     + SPLL HV      AP QVI SS
Sbjct: 723 PSLSRRRSRAHLSYSKATESPLDKPSEVRRESSSLMSPLLKHVTMTNNSAPSQVITSS 780


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,090,662
Number of Sequences: 27780
Number of extensions: 200054
Number of successful extensions: 685
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 655
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 685
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1423653030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)