Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120853.seq
         (642 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    30   0.25 
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    28   1.00 
SPCC777.13 |vps35||retromer complex subunit Vps35|Schizosaccharo...    28   1.00 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    28   1.3  
SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase Clp1/F...    28   1.3  
SPAC1486.06 |||nicotinate phosphoribosyltransferase |Schizosacch...    27   2.3  
SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr 2|||Ma...    27   3.0  
SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces p...    26   4.0  
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha...    26   5.3  
SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|c...    25   7.0  
SPAC20G8.10c ||SPAC3A12.01c|beclin family protein|Schizosaccharo...    25   7.0  
SPAC1F8.03c |str3||siderophore-iron transporter Str3 |Schizosacc...    25   7.0  
SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomy...    25   7.0  
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki...    25   7.0  
SPAC1F5.05c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   9.3  

>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
           Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 30.3 bits (65), Expect = 0.25
 Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
 Frame = +2

Query: 23  QIKSMTDERGNFYYNTPPPPLRY--PSNPATAIFTNAQTYNNAPGYVPPTTRDNKMDTSR 196
           QI     +RGN +  +PPPPL Y  P   AT    NA   NNA      TT  N  +   
Sbjct: 48  QIPLYWQQRGNEFQASPPPPLGYVTPEYGATGTPVNA---NNASRVDYATTAANVPEEYA 104

Query: 197 SNSTNSVA 220
           ++ ++ +A
Sbjct: 105 NDYSSELA 112


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 28.3 bits (60), Expect = 1.00
 Identities = 18/73 (24%), Positives = 32/73 (43%)
 Frame = +2

Query: 65  NTPPPPLRYPSNPATAIFTNAQTYNNAPGYVPPTTRDNKMDTSRSNSTNSVAIAPYNKSK 244
           +TPPP   +PS   T+  T++   +     +P  + + K  ++ S +    A      S 
Sbjct: 690 STPPPTTSFPSTFTTSFITSSSLSS-----IPNNSTEVKTASTSSGTEIKTASTSSGSSS 744

Query: 245 EPTPTPANLFGTT 283
             + TPA+   TT
Sbjct: 745 SSSYTPASSTSTT 757


>SPCC777.13 |vps35||retromer complex subunit
           Vps35|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 785

 Score = 28.3 bits (60), Expect = 1.00
 Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 6/45 (13%)
 Frame = +1

Query: 259 AGESIWY------NKCVDFVQKIIRYYRCNDMSELSPLMIHFINT 375
           AGE++ Y      N+C+ F+ +  R ++C D +E   L+  F+NT
Sbjct: 497 AGENVKYLLPVVVNRCI-FLARNFRIFKCMDWAEKVRLLWEFVNT 540


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 18/64 (28%), Positives = 25/64 (39%)
 Frame = +2

Query: 71  PPPPLRYPSNPATAIFTNAQTYNNAPGYVPPTTRDNKMDTSRSNSTNSVAIAPYNKSKEP 250
           PPPP     N       N  + ++ P   PP          RSN+  S+ + P  +S  P
Sbjct: 312 PPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPP---------RSNAAGSIPLPPQGRSAPP 362

Query: 251 TPTP 262
            P P
Sbjct: 363 PPPP 366



 Score = 27.5 bits (58), Expect = 1.7
 Identities = 19/64 (29%), Positives = 26/64 (40%), Gaps = 1/64 (1%)
 Frame = +2

Query: 74  PPPLRYPSNPATAIFTNAQTYNNAPGYVPPTTRD-NKMDTSRSNSTNSVAIAPYNKSKEP 250
           PPP+  PSN   +   N+     AP  + P     +K      +S  S A    NK + P
Sbjct: 253 PPPIPPPSNGTVSSPPNSPPRPIAPVSMNPAINSTSKPPLPPPSSRVSAAALAANKKRPP 312

Query: 251 TPTP 262
            P P
Sbjct: 313 PPPP 316


>SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase
           Clp1/Flp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 537

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = -1

Query: 552 FSTNDALKYIRIARPGLGRVALSQLFLQPNQVAY 451
           F+ N+ + Y+RI RPG+  V   Q +L  NQV +
Sbjct: 307 FTANEVIAYMRIMRPGM-VVGPQQHWLHINQVHF 339


>SPAC1486.06 |||nicotinate phosphoribosyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 410

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 12/46 (26%), Positives = 23/46 (50%)
 Frame = +2

Query: 194 RSNSTNSVAIAPYNKSKEPTPTPANLFGTTNVWILFKKLLDITGAM 331
           R   T  + +    K++E    P +  GT+NV+   K  L+++G +
Sbjct: 176 RDPHTQEIVLQGLMKAQEDFKGPGSFLGTSNVYFAAKYNLNVSGTV 221


>SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 614

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = +3

Query: 447 HDTPPDSVAKRVGTRQRGRVPAERFEYISGHRL 545
           +D+ PD++ +RV  +QR   P + F+ I  + +
Sbjct: 160 NDSVPDTIDERVLNKQRNNKPLDNFKCIENNNV 192


>SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 584

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = +2

Query: 77  PPLRYPSNPATAIFTNAQTYNNAPGYVPPTTRDNKMDTSRSNSTNSVA 220
           PP+  P+  +    TN+   ++A G+ PP     K++  RS+S N  A
Sbjct: 536 PPIVKPNLMSEPTPTNSDEKSHALGFPPPP--GQKIEFQRSSSKNGTA 581


>SPCC1235.05c |fft2||fun thirty related protein
           Fft2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1284

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 23/68 (33%), Positives = 28/68 (41%), Gaps = 13/68 (19%)
 Frame = +2

Query: 98  NPATAIFTN--AQTYNNA-PGYVPPTTRDNKMDT----------SRSNSTNSVAIAPYNK 238
           NP +AI     AQ  NN  P YV   +R +   T          SRS+S N V   P N 
Sbjct: 178 NPTSAIPAQPPAQPVNNVLPSYVRSNSRSSARSTARSAPRSTQRSRSSSANPVTTPPVNN 237

Query: 239 SKEPTPTP 262
           +    P P
Sbjct: 238 TLLTPPAP 245


>SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 658

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 9/53 (16%)
 Frame = +2

Query: 158 PPTTRDNKMDTSRSNSTNSV----AIAPY-NKSKEP----TPTPANLFGTTNV 289
           P  +  N  + S SN+  +V    A+ P  N S +P    +P+ ANLFGT+ V
Sbjct: 67  PSLSSINNSNNSSSNTGGNVLPNPALTPVRNMSNKPPLTWSPSSANLFGTSKV 119


>SPAC20G8.10c ||SPAC3A12.01c|beclin family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 464

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = +2

Query: 17  RVQIKSMTDERGNFYY-NTPPPPLRYPS 97
           R+Q+   T   G++ + N PPP LR P+
Sbjct: 63  RLQLYKKTISEGDYNFDNVPPPELRTPT 90


>SPAC1F8.03c |str3||siderophore-iron transporter Str3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 630

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +1

Query: 163 YDARQQNGHEPQQQHKLGSDRTVQQEQR 246
           Y   QQN  E  Q HK   D+   QE++
Sbjct: 600 YLGNQQNAVEGDQDHKKKGDKETTQEEK 627


>SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 991

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 12/32 (37%), Positives = 14/32 (43%)
 Frame = +2

Query: 47   RGNFYYNTPPPPLRYPSNPATAIFTNAQTYNN 142
            RG  Y N PP    Y SN         ++YNN
Sbjct: 953  RGGGYSNGPPAGNHYSSNRGKGYGYQRESYNN 984


>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase kinase
            Win1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1436

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 14/48 (29%), Positives = 28/48 (58%), Gaps = 4/48 (8%)
 Frame = -1

Query: 537  ALKYIRIARPGL----GRVALSQLFLQPNQVAYHGLLRFKPLYHVYVD 406
            AL   RI+RP +    G + + +LF  PN V+Y+G+   +   +++++
Sbjct: 1152 ALHKPRISRPMIKRIKGEMLVLELFDHPNVVSYYGIEVHREKVNIFME 1199


>SPAC1F5.05c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 151

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = +2

Query: 74  PPPLRYPSNPATAIFTNAQTYNNAPGYVPPTTRDNKMDTSRSNS 205
           PP    P++P +   +NA   N    Y+P   R     TS ++S
Sbjct: 54  PPVNTGPTSPVSINASNAAPSNLKASYIPANPRRLSSSTSSASS 97


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,440,569
Number of Sequences: 5004
Number of extensions: 49361
Number of successful extensions: 216
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 215
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)