Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120853.seq
(642 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_37483| Best HMM Match : Drf_FH1 (HMM E-Value=6.6) 33 0.20
SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20) 32 0.46
SB_57324| Best HMM Match : ig (HMM E-Value=1e-26) 31 0.80
SB_48630| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.4
SB_37663| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.4
SB_13884| Best HMM Match : LRR_1 (HMM E-Value=6.3e-06) 29 3.2
SB_46921| Best HMM Match : Endomucin (HMM E-Value=6.3) 29 3.2
SB_16515| Best HMM Match : Extensin_2 (HMM E-Value=0.12) 29 3.2
SB_7402| Best HMM Match : Extensin_2 (HMM E-Value=2) 29 3.2
SB_28158| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_25956| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_36684| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_59142| Best HMM Match : RVT_1 (HMM E-Value=2.5e-09) 28 5.6
SB_52004| Best HMM Match : rve (HMM E-Value=1.2e-16) 28 5.6
SB_50931| Best HMM Match : Extensin_2 (HMM E-Value=0.14) 28 5.6
SB_50497| Best HMM Match : CH (HMM E-Value=0.0084) 28 5.6
SB_43735| Best HMM Match : PHD (HMM E-Value=5.6e-06) 28 5.6
SB_41742| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.6
SB_39020| Best HMM Match : zf-CCHC (HMM E-Value=0.0048) 28 5.6
SB_34336| Best HMM Match : zf-CCHC (HMM E-Value=0.0048) 28 5.6
SB_32984| Best HMM Match : zf-CCHC (HMM E-Value=0.0048) 28 5.6
SB_26129| Best HMM Match : RVT_1 (HMM E-Value=1.2e-27) 28 5.6
SB_21933| Best HMM Match : RVT_1 (HMM E-Value=9.1e-27) 28 5.6
SB_20467| Best HMM Match : zf-CCHC (HMM E-Value=0.0048) 28 5.6
SB_15028| Best HMM Match : Drf_FH1 (HMM E-Value=0.84) 28 5.6
SB_3510| Best HMM Match : zf-CCHC (HMM E-Value=0.0048) 28 5.6
SB_1807| Best HMM Match : zf-CCHC (HMM E-Value=0.0048) 28 5.6
SB_54014| Best HMM Match : zf-CCHC (HMM E-Value=0.0048) 28 5.6
SB_51857| Best HMM Match : zf-CCHC (HMM E-Value=0.0048) 28 5.6
SB_49367| Best HMM Match : AAA (HMM E-Value=0) 28 5.6
SB_47272| Best HMM Match : zf-CCHC (HMM E-Value=0.0048) 28 5.6
SB_45059| Best HMM Match : zf-CCHC (HMM E-Value=0.0048) 28 5.6
SB_41413| Best HMM Match : zf-CCHC (HMM E-Value=0.0048) 28 5.6
SB_27634| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.6
SB_27583| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.6
SB_25888| Best HMM Match : zf-CCHC (HMM E-Value=0.0048) 28 5.6
SB_19509| Best HMM Match : rve (HMM E-Value=5.4e-26) 28 5.6
SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41) 28 5.6
SB_16379| Best HMM Match : zf-CCHC (HMM E-Value=0.0048) 28 5.6
SB_11418| Best HMM Match : zf-CCHC (HMM E-Value=0.0048) 28 5.6
SB_10464| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.6
SB_7494| Best HMM Match : RVT_1 (HMM E-Value=4.6e-28) 28 5.6
SB_4571| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.6
SB_3197| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.6
SB_24| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.6
SB_33431| Best HMM Match : zf-CCHC (HMM E-Value=0.0048) 28 7.4
SB_8336| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.84) 28 7.4
SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0) 28 7.4
SB_31885| Best HMM Match : RVT_1 (HMM E-Value=4.6e-28) 28 7.4
SB_29515| Best HMM Match : TolA (HMM E-Value=0.031) 28 7.4
SB_13666| Best HMM Match : IncA (HMM E-Value=3.7) 28 7.4
SB_6709| Best HMM Match : PCNA_C (HMM E-Value=9.8) 28 7.4
SB_56618| Best HMM Match : DUF1213 (HMM E-Value=0.022) 27 9.8
SB_47112| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.8
SB_39538| Best HMM Match : VWA (HMM E-Value=0) 27 9.8
SB_9228| Best HMM Match : GoLoco (HMM E-Value=4.2) 27 9.8
SB_54309| Best HMM Match : SH2 (HMM E-Value=5.1e-17) 27 9.8
SB_51678| Best HMM Match : zf-CCHC (HMM E-Value=0.0048) 27 9.8
SB_43061| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.8
SB_22859| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.8
SB_11627| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=2.6) 27 9.8
>SB_37483| Best HMM Match : Drf_FH1 (HMM E-Value=6.6)
Length = 237
Score = 33.1 bits (72), Expect = 0.20
Identities = 26/82 (31%), Positives = 36/82 (43%), Gaps = 7/82 (8%)
Frame = +2
Query: 59 YYNTPPPPLRYP-----SNPATAIFTNAQTYNNAPGYVP--PTTRDNKMDTSRSNSTNSV 217
Y TP P + P S PA + Q + P Y P P + +M + S ST S
Sbjct: 57 YTATPAPAQQAPHTTAASQPAPYTPASGQPASYTPAYTPYTPASTVGRMPPTTSQSTPSP 116
Query: 218 AIAPYNKSKEPTPTPANLFGTT 283
A P+ + + PTP L GT+
Sbjct: 117 A--PFFQQQPLVPTPVTLGGTS 136
>SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20)
Length = 1313
Score = 31.9 bits (69), Expect = 0.46
Identities = 19/83 (22%), Positives = 37/83 (44%)
Frame = +2
Query: 26 IKSMTDERGNFYYNTPPPPLRYPSNPATAIFTNAQTYNNAPGYVPPTTRDNKMDTSRSNS 205
+K + + ++ P PS P T + ++ + + P R K +S S+S
Sbjct: 1079 VKESKEVKNKALPDSKPAVKSSPSPPPTKPRPSRRSLSKSVSKSPSPARKGKRSSS-SSS 1137
Query: 206 TNSVAIAPYNKSKEPTPTPANLF 274
+ S + +P + + PTP P L+
Sbjct: 1138 SRSRSRSPRRRKRSPTPKPTKLY 1160
>SB_57324| Best HMM Match : ig (HMM E-Value=1e-26)
Length = 947
Score = 31.1 bits (67), Expect = 0.80
Identities = 21/64 (32%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
Frame = +1
Query: 166 DARQQNGHEPQQQHKLGSDRTVQQEQRTDADAGESIWYNKCVDFVQKI-IRYYRCNDMSE 342
D R++NGH Q + D T + D E NKC D V + Y NDM
Sbjct: 834 DVRKENGHTIPQNKDIVKDTTGLNGVICNGDNSELRTQNKCTDEVARTEPNGYTDNDMDG 893
Query: 343 LSPL 354
LS +
Sbjct: 894 LSDI 897
>SB_48630| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 228
Score = 29.5 bits (63), Expect = 2.4
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +2
Query: 62 YNTPPPPLRYPSNPATAIFTNAQ 130
YNT PPPL +P++P ++ Q
Sbjct: 58 YNTYPPPLSHPNDPTRGFYSPVQ 80
>SB_37663| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1735
Score = 29.5 bits (63), Expect = 2.4
Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 3/65 (4%)
Frame = +2
Query: 92 PSNPATAIFTNAQTYNNA---PGYVPPTTRDNKMDTSRSNSTNSVAIAPYNKSKEPTPTP 262
PS PAT ++ + + P Y P ++ T ST A P +K+ TP+
Sbjct: 280 PSCPATLVYEKSSQQKGSEETPSYAPTQMYSSEHTTGSLQSTQPTAEPPIDKTPSKTPSK 339
Query: 263 ANLFG 277
G
Sbjct: 340 VKPHG 344
>SB_13884| Best HMM Match : LRR_1 (HMM E-Value=6.3e-06)
Length = 575
Score = 29.1 bits (62), Expect = 3.2
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +2
Query: 41 DERGNFYYNTPPPPLRYPSNPATAIFTNAQTYNNAPGYVPPTTRD-NKMDTSRSN 202
+ERG ++ +PS P TA FTN + V P +R+ N++ SRS+
Sbjct: 511 EERGYGHFIKTRTGDPHPSYPLTASFTNYPLLSTLDPLVAPLSRELNQLPASRSH 565
>SB_46921| Best HMM Match : Endomucin (HMM E-Value=6.3)
Length = 312
Score = 29.1 bits (62), Expect = 3.2
Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 7/64 (10%)
Frame = +2
Query: 92 PSNPATAIFTNAQTYNNAPGY-------VPPTTRDNKMDTSRSNSTNSVAIAPYNKSKEP 250
PS P ++ + + T P + +PPT + +S S T V +P ++
Sbjct: 49 PSLPTSSTHSTSPTVQTTPAFTTSPATILPPTAKTTSSTSSTSKPTEDVGTSPQPSTENE 108
Query: 251 TPTP 262
T TP
Sbjct: 109 THTP 112
>SB_16515| Best HMM Match : Extensin_2 (HMM E-Value=0.12)
Length = 917
Score = 29.1 bits (62), Expect = 3.2
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Frame = +2
Query: 74 PPPLRYPSN-PATAIFTNAQTYNNAPGYVPPTTRDNKMDTSRSNSTNS 214
PP R+PS P+ NA + +N P Y P D+ D S + +S
Sbjct: 550 PPEYRFPSEEPSPYAEENAISRSNPPVYTPKEEDDDDDDDEESETEDS 597
>SB_7402| Best HMM Match : Extensin_2 (HMM E-Value=2)
Length = 267
Score = 29.1 bits (62), Expect = 3.2
Identities = 17/67 (25%), Positives = 31/67 (46%)
Frame = +2
Query: 65 NTPPPPLRYPSNPATAIFTNAQTYNNAPGYVPPTTRDNKMDTSRSNSTNSVAIAPYNKSK 244
N+ P RY P+ +T+ +Y + Y P T+ S +++T+ + Y +
Sbjct: 129 NSATRPPRYTPTPS---YTSTTSYTSTTSYTPTTS--YTPTPSYTSTTSYTSTTSYTSTT 183
Query: 245 EPTPTPA 265
TPTP+
Sbjct: 184 SYTPTPS 190
Score = 28.7 bits (61), Expect = 4.2
Identities = 17/65 (26%), Positives = 28/65 (43%)
Frame = +2
Query: 71 PPPPLRYPSNPATAIFTNAQTYNNAPGYVPPTTRDNKMDTSRSNSTNSVAIAPYNKSKEP 250
PP PS +T +T+ +Y Y P T TS +++T+ + Y +
Sbjct: 134 PPRYTPTPSYTSTTSYTSTTSYTPTTSYTP--TPSYTSTTSYTSTTSYTSTTSYTPTPSY 191
Query: 251 TPTPA 265
T TP+
Sbjct: 192 TSTPS 196
>SB_28158| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 256
Score = 28.7 bits (61), Expect = 4.2
Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
Frame = +2
Query: 92 PSNPATAIFTNA-QTYNNAPGYVPPTTRDNKMDTSRSNSTNSVAIAPYNKSKEP-TPTPA 265
P++ T F N+ + N + P + RDN +DTS ++ + + NK++ TP
Sbjct: 132 PNDNNTLSFDNSFNPFRNKSTWTPSSGRDNSLDTSPNSVKLQIQNSTLNKTRSNITPGER 191
Query: 266 NLFGTTN 286
N N
Sbjct: 192 NALTQLN 198
>SB_25956| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1146
Score = 28.7 bits (61), Expect = 4.2
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = +1
Query: 121 QRANLQQRARVRAAYDARQQNGHEPQQQHKLGSDRTVQQEQRTD 252
Q QQ + +D +QQ H+ QQQH QQ+QR D
Sbjct: 1078 QHDQQQQNTGQQQQHDKQQQ--HDQQQQHDQQQQHDQQQQQRHD 1119
>SB_36684| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 244
Score = 28.7 bits (61), Expect = 4.2
Identities = 27/114 (23%), Positives = 44/114 (38%), Gaps = 6/114 (5%)
Frame = +1
Query: 187 HEPQQQHKLGSDRTVQQEQRTDADAGESIWYNKC-VDFVQKIIRYYRCNDMSEL-----S 348
HE +Q+ K + + + + T A GE Y C +FV+ I Y C ++ S
Sbjct: 61 HETEQEQKREMEEDLNK-RLTKARDGERCKYENCNTEFVRNINECYCCTELEGCMEALQS 119
Query: 349 PLMIHFINTIRDMCIDTNPINVNVVKRFESEETMIRHLIRLQKELGQGNAAESR 510
L++ + C+ +P V S + L R KE + E R
Sbjct: 120 DLVVQDLEPCTKKCVTEHPGFAPVCLEKWSLRMAAKKLRRRDKETYKQTGTEER 173
>SB_59142| Best HMM Match : RVT_1 (HMM E-Value=2.5e-09)
Length = 772
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = +1
Query: 394 DTNPINVNVVKRFESEETMIRHLIRLQKELGQGNAAES 507
DT+ +VN V +FES++ I++ R K+ GQG ++
Sbjct: 184 DTSETDVNAVSKFESKKPNIKNYRR--KQRGQGKQCDN 219
>SB_52004| Best HMM Match : rve (HMM E-Value=1.2e-16)
Length = 869
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = +1
Query: 394 DTNPINVNVVKRFESEETMIRHLIRLQKELGQGNAAES 507
DT+ +VN V +FES++ I++ R K+ GQG ++
Sbjct: 184 DTSETDVNAVSKFESKKPNIKNYRR--KQRGQGKQCDN 219
>SB_50931| Best HMM Match : Extensin_2 (HMM E-Value=0.14)
Length = 348
Score = 28.3 bits (60), Expect = 5.6
Identities = 13/51 (25%), Positives = 24/51 (47%)
Frame = +2
Query: 119 TNAQTYNNAPGYVPPTTRDNKMDTSRSNSTNSVAIAPYNKSKEPTPTPANL 271
T++++ N+ G +P T DN + N A A + +K PA++
Sbjct: 61 TSSESSTNSTGAIPATKPDNSKPQDKETELNQTASATPSNAKPRGKKPASV 111
>SB_50497| Best HMM Match : CH (HMM E-Value=0.0084)
Length = 2086
Score = 28.3 bits (60), Expect = 5.6
Identities = 17/58 (29%), Positives = 26/58 (44%)
Frame = +2
Query: 92 PSNPATAIFTNAQTYNNAPGYVPPTTRDNKMDTSRSNSTNSVAIAPYNKSKEPTPTPA 265
PS+ T + T A P T D+K T + +TN+ P + + +P PT A
Sbjct: 1780 PSSAKTTTRPASTTKKLATSSTKPAT-DDKKQTKPATTTNASKTRPASSAAKPKPTSA 1836
>SB_43735| Best HMM Match : PHD (HMM E-Value=5.6e-06)
Length = 772
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = +1
Query: 394 DTNPINVNVVKRFESEETMIRHLIRLQKELGQGNAAES 507
DT+ +VN V +FES++ I++ R K+ GQG ++
Sbjct: 184 DTSETDVNAVSKFESKKPNIKNYRR--KQRGQGKQCDN 219
>SB_41742| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1061
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = +1
Query: 394 DTNPINVNVVKRFESEETMIRHLIRLQKELGQGNAAES 507
DT+ +VN V +FES++ I++ R K+ GQG ++
Sbjct: 184 DTSETDVNAVSKFESKKPNIKNYRR--KQRGQGKQCDN 219
>SB_39020| Best HMM Match : zf-CCHC (HMM E-Value=0.0048)
Length = 319
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = +1
Query: 394 DTNPINVNVVKRFESEETMIRHLIRLQKELGQGNAAES 507
DT+ +VN V +FES++ I++ R K+ GQG ++
Sbjct: 126 DTSETDVNAVSKFESKKPNIKNYRR--KQRGQGKQCDN 161
>SB_34336| Best HMM Match : zf-CCHC (HMM E-Value=0.0048)
Length = 374
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = +1
Query: 394 DTNPINVNVVKRFESEETMIRHLIRLQKELGQGNAAES 507
DT+ +VN V +FES++ I++ R K+ GQG ++
Sbjct: 10 DTSETDVNAVSKFESKKPNIKNYRR--KQRGQGKQCDN 45
>SB_32984| Best HMM Match : zf-CCHC (HMM E-Value=0.0048)
Length = 361
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = +1
Query: 394 DTNPINVNVVKRFESEETMIRHLIRLQKELGQGNAAES 507
DT+ +VN V +FES++ I++ R K+ GQG ++
Sbjct: 10 DTSETDVNAVSKFESKKPNIKNYRR--KQRGQGKQCDN 45
>SB_26129| Best HMM Match : RVT_1 (HMM E-Value=1.2e-27)
Length = 1036
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = +1
Query: 394 DTNPINVNVVKRFESEETMIRHLIRLQKELGQGNAAES 507
DT+ +VN V +FES++ I++ R K+ GQG ++
Sbjct: 184 DTSETDVNAVSKFESKKPNIKNYRR--KQRGQGKQCDN 219
>SB_21933| Best HMM Match : RVT_1 (HMM E-Value=9.1e-27)
Length = 510
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = +1
Query: 394 DTNPINVNVVKRFESEETMIRHLIRLQKELGQGNAAES 507
DT+ +VN V +FES++ I++ R K+ GQG ++
Sbjct: 10 DTSETDVNAVSKFESKKPNIKNYRR--KQRGQGKQCDN 45
>SB_20467| Best HMM Match : zf-CCHC (HMM E-Value=0.0048)
Length = 317
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = +1
Query: 394 DTNPINVNVVKRFESEETMIRHLIRLQKELGQGNAAES 507
DT+ +VN V +FES++ I++ R K+ GQG ++
Sbjct: 10 DTSETDVNAVSKFESKKPNIKNYRR--KQRGQGKQCDN 45
>SB_15028| Best HMM Match : Drf_FH1 (HMM E-Value=0.84)
Length = 944
Score = 28.3 bits (60), Expect = 5.6
Identities = 17/58 (29%), Positives = 26/58 (44%)
Frame = +2
Query: 92 PSNPATAIFTNAQTYNNAPGYVPPTTRDNKMDTSRSNSTNSVAIAPYNKSKEPTPTPA 265
PS+ T + T A P T D+K T + +TN+ P + + +P PT A
Sbjct: 638 PSSAKTTTRPASTTKKLATSSTKPAT-DDKKQTKPATTTNASKTRPASSAAKPKPTSA 694
>SB_3510| Best HMM Match : zf-CCHC (HMM E-Value=0.0048)
Length = 272
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = +1
Query: 394 DTNPINVNVVKRFESEETMIRHLIRLQKELGQGNAAES 507
DT+ +VN V +FES++ I++ R K+ GQG ++
Sbjct: 130 DTSETDVNAVSKFESKKPNIKNYRR--KQRGQGKQCDN 165
>SB_1807| Best HMM Match : zf-CCHC (HMM E-Value=0.0048)
Length = 281
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = +1
Query: 394 DTNPINVNVVKRFESEETMIRHLIRLQKELGQGNAAES 507
DT+ +VN V +FES++ I++ R K+ GQG ++
Sbjct: 10 DTSETDVNAVSKFESKKPNIKNYRR--KQRGQGKQCDN 45
>SB_54014| Best HMM Match : zf-CCHC (HMM E-Value=0.0048)
Length = 176
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = +1
Query: 394 DTNPINVNVVKRFESEETMIRHLIRLQKELGQGNAAES 507
DT+ +VN V +FES++ I++ R K+ GQG ++
Sbjct: 10 DTSETDVNAVSKFESKKPNIKNYRR--KQRGQGKQCDN 45
>SB_51857| Best HMM Match : zf-CCHC (HMM E-Value=0.0048)
Length = 438
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = +1
Query: 394 DTNPINVNVVKRFESEETMIRHLIRLQKELGQGNAAES 507
DT+ +VN V +FES++ I++ R K+ GQG ++
Sbjct: 130 DTSETDVNAVSKFESKKPNIKNYRR--KQRGQGKQCDN 165
>SB_49367| Best HMM Match : AAA (HMM E-Value=0)
Length = 976
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = +1
Query: 394 DTNPINVNVVKRFESEETMIRHLIRLQKELGQGNAAES 507
DT+ +VN V +FES++ I++ R K+ GQG ++
Sbjct: 10 DTSETDVNAVSKFESKKPNIKNYRR--KQRGQGKQCDN 45
>SB_47272| Best HMM Match : zf-CCHC (HMM E-Value=0.0048)
Length = 737
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = +1
Query: 394 DTNPINVNVVKRFESEETMIRHLIRLQKELGQGNAAES 507
DT+ +VN V +FES++ I++ R K+ GQG ++
Sbjct: 430 DTSETDVNAVSKFESKKPNIKNYRR--KQRGQGKQCDN 465
>SB_45059| Best HMM Match : zf-CCHC (HMM E-Value=0.0048)
Length = 519
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = +1
Query: 394 DTNPINVNVVKRFESEETMIRHLIRLQKELGQGNAAES 507
DT+ +VN V +FES++ I++ R K+ GQG ++
Sbjct: 184 DTSETDVNAVSKFESKKPNIKNYRR--KQRGQGKQCDN 219
>SB_41413| Best HMM Match : zf-CCHC (HMM E-Value=0.0048)
Length = 471
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = +1
Query: 394 DTNPINVNVVKRFESEETMIRHLIRLQKELGQGNAAES 507
DT+ +VN V +FES++ I++ R K+ GQG ++
Sbjct: 160 DTSETDVNAVSKFESKKPNIKNYRR--KQRGQGKQCDN 195
>SB_27634| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 711
Score = 28.3 bits (60), Expect = 5.6
Identities = 11/38 (28%), Positives = 20/38 (52%)
Frame = +2
Query: 149 GYVPPTTRDNKMDTSRSNSTNSVAIAPYNKSKEPTPTP 262
GY +++ +K ++ S++T+ P S P PTP
Sbjct: 57 GYAAKSSKSSKSSSTSSSTTHGPTPVPATPSSPPRPTP 94
>SB_27583| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 515
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = +1
Query: 394 DTNPINVNVVKRFESEETMIRHLIRLQKELGQGNAAES 507
DT+ +VN V +FES++ I++ R K+ GQG ++
Sbjct: 184 DTSETDVNAVSKFESKKPNIKNYRR--KQRGQGKQCDN 219
>SB_25888| Best HMM Match : zf-CCHC (HMM E-Value=0.0048)
Length = 606
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = +1
Query: 394 DTNPINVNVVKRFESEETMIRHLIRLQKELGQGNAAES 507
DT+ +VN V +FES++ I++ R K+ GQG ++
Sbjct: 184 DTSETDVNAVSKFESKKPNIKNYRR--KQRGQGKQCDN 219
>SB_19509| Best HMM Match : rve (HMM E-Value=5.4e-26)
Length = 1195
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = +1
Query: 394 DTNPINVNVVKRFESEETMIRHLIRLQKELGQGNAAES 507
DT+ +VN V +FES++ I++ R K+ GQG ++
Sbjct: 130 DTSETDVNAVSKFESKKPNIKNYRR--KQRGQGKQCDN 165
>SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41)
Length = 690
Score = 28.3 bits (60), Expect = 5.6
Identities = 19/67 (28%), Positives = 26/67 (38%), Gaps = 5/67 (7%)
Frame = +2
Query: 71 PPPPLRYPSNP---ATAIFTNAQTYNNAPGYVPPTTRDNKMDTS--RSNSTNSVAIAPYN 235
PPPP PSN +N Y AP PP + + +N S + YN
Sbjct: 510 PPPPRNQPSNQNWNQNYDQSNQNMYGPAPPPPPPQQQQQQSQAQPLMTNQQQSYSTQQYN 569
Query: 236 KSKEPTP 256
+S + P
Sbjct: 570 QSYQQQP 576
>SB_16379| Best HMM Match : zf-CCHC (HMM E-Value=0.0048)
Length = 499
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = +1
Query: 394 DTNPINVNVVKRFESEETMIRHLIRLQKELGQGNAAES 507
DT+ +VN V +FES++ I++ R K+ GQG ++
Sbjct: 77 DTSETDVNAVSKFESKKPNIKNYRR--KQRGQGKQCDN 112
>SB_11418| Best HMM Match : zf-CCHC (HMM E-Value=0.0048)
Length = 292
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = +1
Query: 394 DTNPINVNVVKRFESEETMIRHLIRLQKELGQGNAAES 507
DT+ +VN V +FES++ I++ R K+ GQG ++
Sbjct: 80 DTSETDVNAVSKFESKKPNIKNYRR--KQRGQGKQCDN 115
>SB_10464| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 476
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = +1
Query: 394 DTNPINVNVVKRFESEETMIRHLIRLQKELGQGNAAES 507
DT+ +VN V +FES++ I++ R K+ GQG ++
Sbjct: 10 DTSETDVNAVSKFESKKPNIKNYRR--KQRGQGKQCDN 45
>SB_7494| Best HMM Match : RVT_1 (HMM E-Value=4.6e-28)
Length = 960
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = +1
Query: 394 DTNPINVNVVKRFESEETMIRHLIRLQKELGQGNAAES 507
DT+ +VN V +FES++ I++ R K+ GQG ++
Sbjct: 184 DTSETDVNAVSKFESKKPNIKNYRR--KQRGQGKQCDN 219
>SB_4571| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 737
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = +1
Query: 394 DTNPINVNVVKRFESEETMIRHLIRLQKELGQGNAAES 507
DT+ +VN V +FES++ I++ R K+ GQG ++
Sbjct: 635 DTSETDVNAVSKFESKKPNIKNYRR--KQRGQGKQCDN 670
>SB_3197| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 652
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = +1
Query: 394 DTNPINVNVVKRFESEETMIRHLIRLQKELGQGNAAES 507
DT+ +VN V +FES++ I++ R K+ GQG ++
Sbjct: 184 DTSETDVNAVSKFESKKPNIKNYRR--KQRGQGKQCDN 219
>SB_24| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1246
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = +1
Query: 394 DTNPINVNVVKRFESEETMIRHLIRLQKELGQGNAAES 507
DT+ +VN V +FES++ I++ R K+ GQG ++
Sbjct: 184 DTSETDVNAVSKFESKKPNIKNYRR--KQRGQGKQCDN 219
>SB_33431| Best HMM Match : zf-CCHC (HMM E-Value=0.0048)
Length = 377
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = +1
Query: 394 DTNPINVNVVKRFESEETMIRHLIRLQKELGQGNAAES 507
DT+ VN V +FES++ I++ R K+ GQG ++
Sbjct: 184 DTSETGVNAVSKFESKKPNIKNYRR--KQRGQGKQCDN 219
>SB_8336| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.84)
Length = 509
Score = 27.9 bits (59), Expect = 7.4
Identities = 18/73 (24%), Positives = 23/73 (31%)
Frame = +2
Query: 65 NTPPPPLRYPSNPATAIFTNAQTYNNAPGYVPPTTRDNKMDTSRSNSTNSVAIAPYNKSK 244
NT PP P+ P T T PP T T+ + + P +
Sbjct: 66 NTTPPATTTPTKPTTTTPPATTTPTTPTTTTPPATTTPTKPTTTTPPATTTPTKPTTTTP 125
Query: 245 EPTPTPANLFGTT 283
T TP TT
Sbjct: 126 PGTTTPTKPTTTT 138
>SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0)
Length = 1467
Score = 27.9 bits (59), Expect = 7.4
Identities = 17/62 (27%), Positives = 29/62 (46%)
Frame = +2
Query: 68 TPPPPLRYPSNPATAIFTNAQTYNNAPGYVPPTTRDNKMDTSRSNSTNSVAIAPYNKSKE 247
+P P PS+P+ + + + + +PGY P + S S S S + +P + S
Sbjct: 413 SPSSPAFMPSSPSMSPASPSYS-PTSPGYSPSSPSSGYSPASPSYSPTSPSYSPTSPSYS 471
Query: 248 PT 253
PT
Sbjct: 472 PT 473
>SB_31885| Best HMM Match : RVT_1 (HMM E-Value=4.6e-28)
Length = 922
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = +1
Query: 394 DTNPINVNVVKRFESEETMIRHLIRLQKELGQGNAAES 507
DT+ VN V +FES++ I++ R K+ GQG ++
Sbjct: 184 DTSETGVNAVSKFESKKPNIKNYRR--KQRGQGKQCDN 219
>SB_29515| Best HMM Match : TolA (HMM E-Value=0.031)
Length = 592
Score = 27.9 bits (59), Expect = 7.4
Identities = 17/67 (25%), Positives = 34/67 (50%)
Frame = +2
Query: 20 VQIKSMTDERGNFYYNTPPPPLRYPSNPATAIFTNAQTYNNAPGYVPPTTRDNKMDTSRS 199
V+ K + E+ + +P P +R S I+T + T + Y + R +++ TS+
Sbjct: 209 VEEKIESSEKFSEKSESPEPSVRVDSETGDEIYTVSATPSETESYATTSMR-SRVSTSKG 267
Query: 200 NSTNSVA 220
+S+ SV+
Sbjct: 268 SSSPSVS 274
>SB_13666| Best HMM Match : IncA (HMM E-Value=3.7)
Length = 476
Score = 27.9 bits (59), Expect = 7.4
Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
Frame = +2
Query: 59 YYNTPPPPLRYPSNPATAIFTNAQTYNNAPGYVPPTTRDNKMDTSRSNSTNSVAIA-PYN 235
Y +PPPP NP + N P + PT D S ++ + ++ +A PY
Sbjct: 365 YKCSPPPPQVDIMNPFALLALNPAIQCANPSLLDPTLNS---DVSNASDSQALGVATPYL 421
Query: 236 KS-KEPTPTPAN 268
E PTPA+
Sbjct: 422 PDVGEVPPTPAD 433
>SB_6709| Best HMM Match : PCNA_C (HMM E-Value=9.8)
Length = 279
Score = 27.9 bits (59), Expect = 7.4
Identities = 16/54 (29%), Positives = 25/54 (46%)
Frame = +2
Query: 77 PPLRYPSNPATAIFTNAQTYNNAPGYVPPTTRDNKMDTSRSNSTNSVAIAPYNK 238
PP + +P + N +++ P Y PP D + T RS S +V A Y +
Sbjct: 144 PPSSHSRSPNSPGSPNPTLFSH-PSYYPPPPLDFQAGTKRSASCMAVVEADYGR 196
>SB_56618| Best HMM Match : DUF1213 (HMM E-Value=0.022)
Length = 1421
Score = 27.5 bits (58), Expect = 9.8
Identities = 12/47 (25%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +2
Query: 50 GNFYYNTPPPPLRYPSNPATAIF-TNAQTYNNAPGYVPPTTRDNKMD 187
G + PPP L++ N + A+F ++ N++ + P ++R D
Sbjct: 268 GRYQRKGPPPRLKFSRNSSPALFPASSMCENSSLSFYPASSRGGSPD 314
>SB_47112| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 970
Score = 27.5 bits (58), Expect = 9.8
Identities = 14/47 (29%), Positives = 18/47 (38%)
Frame = +2
Query: 119 TNAQTYNNAPGYVPPTTRDNKMDTSRSNSTNSVAIAPYNKSKEPTPT 259
T QT P PTT T + ST ++P + P PT
Sbjct: 285 TTQQTTATLPSTKQPTTTQQTTATLPTPSTKPTTVSPTTRQPPPEPT 331
>SB_39538| Best HMM Match : VWA (HMM E-Value=0)
Length = 3208
Score = 27.5 bits (58), Expect = 9.8
Identities = 11/50 (22%), Positives = 26/50 (52%)
Frame = +1
Query: 100 SGNGHIHQRANLQQRARVRAAYDARQQNGHEPQQQHKLGSDRTVQQEQRT 249
S N H+ R ++++R+R +A + +P+++ +L R ++ T
Sbjct: 3012 SRNDHVQSRFGAREKSRIRRGIEAILRGRTKPRRRRRLNKSRRRTHKKTT 3061
>SB_9228| Best HMM Match : GoLoco (HMM E-Value=4.2)
Length = 171
Score = 27.5 bits (58), Expect = 9.8
Identities = 14/57 (24%), Positives = 26/57 (45%)
Frame = +2
Query: 95 SNPATAIFTNAQTYNNAPGYVPPTTRDNKMDTSRSNSTNSVAIAPYNKSKEPTPTPA 265
S P + +++Y N+ ++ + +S S+S NS A + K +P P A
Sbjct: 108 SKPTGPSYKQSKSYKNSTTVTTKRSQASPSSSSSSSSVNSTAGSSRTKPAKPAPMAA 164
>SB_54309| Best HMM Match : SH2 (HMM E-Value=5.1e-17)
Length = 1249
Score = 27.5 bits (58), Expect = 9.8
Identities = 18/53 (33%), Positives = 22/53 (41%)
Frame = +2
Query: 53 NFYYNTPPPPLRYPSNPATAIFTNAQTYNNAPGYVPPTTRDNKMDTSRSNSTN 211
+F PPPP R PS T A ++P TR NK SR+ N
Sbjct: 734 SFAPQRPPPPTRTPSGKDRPHSTTA----TPTLHIPERTRRNKKPKSRAEVVN 782
>SB_51678| Best HMM Match : zf-CCHC (HMM E-Value=0.0048)
Length = 351
Score = 27.5 bits (58), Expect = 9.8
Identities = 14/33 (42%), Positives = 22/33 (66%)
Frame = +1
Query: 394 DTNPINVNVVKRFESEETMIRHLIRLQKELGQG 492
DT+ +VN V +FES++ I++ R K+ GQG
Sbjct: 184 DTSETDVNAVSKFESKKPNIKNYRR--KQRGQG 214
>SB_43061| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1396
Score = 27.5 bits (58), Expect = 9.8
Identities = 14/33 (42%), Positives = 22/33 (66%)
Frame = +1
Query: 394 DTNPINVNVVKRFESEETMIRHLIRLQKELGQG 492
DT+ +VN V +FES++ I++ R K+ GQG
Sbjct: 184 DTSETDVNAVSKFESKKPNIKNYRR--KQRGQG 214
>SB_22859| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1108
Score = 27.5 bits (58), Expect = 9.8
Identities = 17/71 (23%), Positives = 27/71 (38%), Gaps = 1/71 (1%)
Frame = +1
Query: 274 WYNKCVDFVQKIIRYYRCNDMSELSPLMIHFINTIRDMCIDTNPINVNVVKRFESE-ETM 450
W CV V DM LSP ++ + C + + ++RF E +
Sbjct: 898 WLEMCVVHVSTFTAELSITDMHSLSPSVLKVAKYAYEHCQQSEVLYGTFLQRFSEELSAI 957
Query: 451 IRHLIRLQKEL 483
+ +LQK L
Sbjct: 958 FKKAYQLQKAL 968
>SB_11627| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=2.6)
Length = 496
Score = 27.5 bits (58), Expect = 9.8
Identities = 9/11 (81%), Positives = 10/11 (90%)
Frame = +2
Query: 71 PPPPLRYPSNP 103
PPPPLRYP +P
Sbjct: 419 PPPPLRYPPSP 429
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,097,330
Number of Sequences: 59808
Number of extensions: 403986
Number of successful extensions: 1908
Number of sequences better than 10.0: 61
Number of HSP's better than 10.0 without gapping: 1521
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1849
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1620947750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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