Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120853.seq
         (642 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   0.47 
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    24   1.1  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    24   1.1  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    24   1.4  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    24   1.4  
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    23   3.3  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    22   4.4  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   7.7  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   7.7  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 25.4 bits (53), Expect = 0.47
 Identities = 14/54 (25%), Positives = 24/54 (44%)
 Frame = +1

Query: 112 HIHQRANLQQRARVRAAYDARQQNGHEPQQQHKLGSDRTVQQEQRTDADAGESI 273
           H HQ  + Q +A+ +     +QQ     QQQ +    +  Q+   T+ D   +I
Sbjct: 815 HHHQSTHPQAQAQAQPQQQQQQQQQQPQQQQQQQQQQQQQQRGPMTNDDFNPNI 868



 Score = 24.2 bits (50), Expect = 1.1
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = +1

Query: 121  QRANLQQRARVRAAYDARQQNGHEPQQQHKLGSDRTVQQEQR 246
            Q+   QQ+ + +      QQ   +PQQQ +    +  QQ+Q+
Sbjct: 1507 QQQQQQQQQQPQQQSQQPQQQQPQPQQQQQQQQQQQPQQQQK 1548



 Score = 23.8 bits (49), Expect = 1.4
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = +1

Query: 118 HQRANLQQRARVRAAYDARQQNGHEPQQQHKLGSDRTVQQEQR 246
           HQ+ +  Q    +A   A+ Q   + QQQ      +  QQ+Q+
Sbjct: 811 HQQLHHHQSTHPQAQAQAQPQQQQQQQQQQPQQQQQQQQQQQQ 853



 Score = 23.0 bits (47), Expect = 2.5
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = +1

Query: 133  LQQRARVRAAYDARQQNGHEPQQQHKLGSDRTVQQEQRTDADAGESI 273
            LQ++ R  A    +QQ   + QQQ +    +  QQ+Q+  A   E +
Sbjct: 1198 LQEQQRNAAMVQQQQQQQQQQQQQQQ--QQQQQQQQQQHQAREREGV 1242



 Score = 21.4 bits (43), Expect = 7.7
 Identities = 12/46 (26%), Positives = 17/46 (36%)
 Frame = +1

Query: 136  QQRARVRAAYDARQQNGHEPQQQHKLGSDRTVQQEQRTDADAGESI 273
            QQR         +QQ   + QQQ +    +  Q + R     G  I
Sbjct: 1201 QQRNAAMVQQQQQQQQQQQQQQQQQQQQQQQQQHQAREREGVGAGI 1246



 Score = 21.4 bits (43), Expect = 7.7
 Identities = 12/48 (25%), Positives = 22/48 (45%)
 Frame = +1

Query: 121  QRANLQQRARVRAAYDARQQNGHEPQQQHKLGSDRTVQQEQRTDADAG 264
            Q+   QQ+   + +   +QQ     QQQ +    +  QQ++   A +G
Sbjct: 1508 QQQQQQQQQPQQQSQQPQQQQPQPQQQQQQQQQQQPQQQQKEYGAVSG 1555


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
 Frame = +2

Query: 134 YNNAPGYVPPTTRDNKMDTSRSNSTNSVAIAPYNKSKEPTPTPANLFGTTNV--WI 295
           Y + P Y+   T+D  ++ S    +N+V  A   K+ E     ++ F  + V  W+
Sbjct: 454 YKSYPNYIDKETKDMNLEISTRPKSNTVENACVLKNTEIFKDKSDWFDYSEVSKWV 509


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 11/42 (26%), Positives = 23/42 (54%)
 Frame = +1

Query: 121 QRANLQQRARVRAAYDARQQNGHEPQQQHKLGSDRTVQQEQR 246
           Q+ + QQ+ + +   +A+Q    + QQQ +    +  QQ+Q+
Sbjct: 421 QQQHQQQQQQTQHVINAQQPQQQQQQQQQQQQQQQQQQQQQQ 462



 Score = 22.6 bits (46), Expect = 3.3
 Identities = 11/42 (26%), Positives = 20/42 (47%)
 Frame = +1

Query: 121 QRANLQQRARVRAAYDARQQNGHEPQQQHKLGSDRTVQQEQR 246
           Q+   QQ+ + +        N  +PQQQ +    +  QQ+Q+
Sbjct: 416 QQMQAQQQHQQQQQQTQHVINAQQPQQQQQQQQQQQQQQQQQ 457


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +2

Query: 218 AIAPYNKSKEPTPTPANLFGTTNVWILFKKLLD 316
           A+   NKSK  T  P N   + ++W   K L +
Sbjct: 301 ALQEMNKSKSITEPPKNCADSGSIWETGKNLFE 333


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +2

Query: 143 APGYVPPTTRDNKMD 187
           +PGYV P T+  K+D
Sbjct: 113 SPGYVQPPTKHQKLD 127


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 10/38 (26%), Positives = 20/38 (52%)
 Frame = +1

Query: 133 LQQRARVRAAYDARQQNGHEPQQQHKLGSDRTVQQEQR 246
           +++R R +  +  R  +  + QQQ +   D+  QQ+ R
Sbjct: 72  MREREREQREHSDRVTSQQQQQQQQQQQQDQQQQQQSR 109


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +2

Query: 254 PTPANLFGTTNVWILFKK 307
           P P   FGTT   IL KK
Sbjct: 37  PKPVPFFGTTKDLILVKK 54


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = -3

Query: 523  SNRSAGTRPRCLVPTLFATESGGVSWSPPIQ 431
            + + A   P  +   + ++ES  VSW PP Q
Sbjct: 1175 TEQDAPEAPIAIKALVMSSESILVSWRPPSQ 1205


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +1

Query: 166 DARQQNGHEPQQQHKL 213
           DAR++ G  P+QQ +L
Sbjct: 171 DARKKKGPTPRQQEEL 186


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,856
Number of Sequences: 438
Number of extensions: 3564
Number of successful extensions: 23
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19315974
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)