Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120851.seq
         (616 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxida...    24   1.2  
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    23   2.7  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    23   2.7  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    23   2.7  
U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II p...    21   8.2  

>AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxidase
           subunit 1 protein.
          Length = 682

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +1

Query: 517 YWRNSLSSNRRHWYHVHKI 573
           YWR  +  N  HW H H +
Sbjct: 196 YWREDIGLNLHHW-HWHLV 213


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -1

Query: 418 LMYTSEQSMVENIPPQTAKLPPTI 347
           + Y  E S  E+IPP    +PP +
Sbjct: 183 MYYRDECSFAESIPPYLFFVPPPL 206


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -1

Query: 418 LMYTSEQSMVENIPPQTAKLPPTI 347
           + Y  E S  E+IPP    +PP +
Sbjct: 416 MYYRDECSFAESIPPYLFFVPPPL 439



 Score = 21.8 bits (44), Expect = 4.7
 Identities = 10/45 (22%), Positives = 25/45 (55%)
 Frame = -2

Query: 198 RAWFSCIFIHDILIFKVQICDCLFLGLQQERISHYFYVLIGGLIN 64
           + W  C++++ +L F++Q  D L    ++ R  + + + + G I+
Sbjct: 668 KRWSQCMYMYFLLGFRLQANDELSAHSKEIRGENTYILALDGDID 712


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -1

Query: 418 LMYTSEQSMVENIPPQTAKLPPTI 347
           + Y  E S  E+IPP    +PP +
Sbjct: 416 MYYRDECSFAESIPPYLFFVPPPL 439



 Score = 21.8 bits (44), Expect = 4.7
 Identities = 10/45 (22%), Positives = 25/45 (55%)
 Frame = -2

Query: 198 RAWFSCIFIHDILIFKVQICDCLFLGLQQERISHYFYVLIGGLIN 64
           + W  C++++ +L F++Q  D L    ++ R  + + + + G I+
Sbjct: 668 KRWSQCMYMYFLLGFRLQANDELSAHSKEIRGENTYILALDGDID 712


>U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II
           protein.
          Length = 490

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +3

Query: 231 YNGSDRWWLFHSIKGFRNAPLG 296
           Y    RW    ++ GFRNA  G
Sbjct: 377 YGCEHRWRQIFNMVGFRNAVQG 398


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,421
Number of Sequences: 336
Number of extensions: 3749
Number of successful extensions: 13
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15666150
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)