Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120851.seq
(616 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3A12.16c |tim17||TIM23 translocase complex subunit Tim17|Sch... 105 7e-24
SPCC16A11.09c |tim23||mitochondrial inner membrane presequence t... 46 4e-06
SPBC25H2.04c |tim22||TIM22 inner membrane protein import complex... 42 7e-05
SPBC1105.15c |htd2||3-hydroxyacyl-ACP dehydratase Htd2 |Schizosa... 29 0.71
SPAC1F3.07c |rsc58||RSC complex subunit Rsc58|Schizosaccharomyce... 28 0.93
SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase Rdp1|Schizosa... 26 3.8
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ... 26 3.8
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb... 26 5.0
SPAC3H8.04 |||chromosome segregation protein|Schizosaccharomyces... 25 8.7
SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 8.7
SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces po... 25 8.7
>SPAC3A12.16c |tim17||TIM23 translocase complex subunit
Tim17|Schizosaccharomyces pombe|chr 1|||Manual
Length = 164
Score = 105 bits (251), Expect = 7e-24
Identities = 44/79 (55%), Positives = 62/79 (78%)
Frame = +3
Query: 255 LFHSIKGFRNAPLGFSRKMLGSLAAVKERSPIVGGNFAVWGGMFSTIDCSLVYMRQKEDP 434
++HSIKG+RN+P G K + ++AA K R+P++GGNF VWGG+FST DC++ +R+KEDP
Sbjct: 32 IWHSIKGWRNSPPG--EKRISAIAAAKTRAPVLGGNFGVWGGLFSTFDCAVKGVRRKEDP 89
Query: 435 WNSIMSGALTGGILAARNG 491
WN+I++G TGG LA R G
Sbjct: 90 WNAIIAGFFTGGALAVRGG 108
Score = 25.4 bits (53), Expect = 6.6
Identities = 8/14 (57%), Positives = 13/14 (92%)
Frame = +1
Query: 175 EYTREPCPWRILDD 216
++TR+PCP+ IL+D
Sbjct: 5 DHTRDPCPYVILND 18
>SPCC16A11.09c |tim23||mitochondrial inner membrane presequence
translocase complex subunit Tim23|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 210
Score = 46.0 bits (104), Expect = 4e-06
Identities = 24/67 (35%), Positives = 37/67 (55%)
Frame = +3
Query: 306 KMLGSLAAVKERSPIVGGNFAVWGGMFSTIDCSLVYMRQKEDPWNSIMSGALTGGILAAR 485
++ G L V R P VG + V +++ I+ + Y RQK NS+ +GALTG + +
Sbjct: 119 RLNGILNGVTRRGPFVGNSLGVLALVYNGINSLIGYKRQKHGWENSVAAGALTGALYKST 178
Query: 486 NGVPAMA 506
G+ AMA
Sbjct: 179 RGLRAMA 185
>SPBC25H2.04c |tim22||TIM22 inner membrane protein import complex
subunit Tim22|Schizosaccharomyces pombe|chr 2|||Manual
Length = 175
Score = 41.9 bits (94), Expect = 7e-05
Identities = 21/55 (38%), Positives = 31/55 (56%)
Frame = +3
Query: 339 RSPIVGGNFAVWGGMFSTIDCSLVYMRQKEDPWNSIMSGALTGGILAARNGVPAM 503
RS NF + G ++S +C + R K D +N+I +G TGG LA R+G A+
Sbjct: 99 RSFSTAKNFGLLGLIYSGSECCIEAFRAKTDIYNAIAAGVFTGGALAVRSGPKAI 153
>SPBC1105.15c |htd2||3-hydroxyacyl-ACP dehydratase Htd2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 300
Score = 28.7 bits (61), Expect = 0.71
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -2
Query: 393 W*RTYHPKQQNYPRLLESAPLLQPNCQAFF 304
W TY K +NYP L+ PLL + +F
Sbjct: 211 WNATYATKSENYPNLVLPGPLLVTSMLEYF 240
>SPAC1F3.07c |rsc58||RSC complex subunit Rsc58|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 403
Score = 28.3 bits (60), Expect = 0.93
Identities = 16/43 (37%), Positives = 27/43 (62%)
Frame = -1
Query: 409 TSEQSMVENIPPQTAKLPPTIGERSFTAAKLPSIFLLKPSGAF 281
+ E ++ + PP TAK P ++ E + + AKLP++ L+ SG F
Sbjct: 169 SQEYTLDKLSPPSTAKPPASVIEFNPSLAKLPTVKYLQ-SGPF 210
>SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase
Rdp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1215
Score = 26.2 bits (55), Expect = 3.8
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -2
Query: 396 LW*RTYHPKQQNYPRLLESAP 334
+W + PK NYP LLES+P
Sbjct: 908 IWDQRLLPKIVNYPPLLESSP 928
>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1955
Score = 26.2 bits (55), Expect = 3.8
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = -2
Query: 219 RVIKDTPRAWFSCIFIHDILI 157
++ DTPRA F+ +F D+LI
Sbjct: 1609 KISMDTPRAKFTNVFFSDVLI 1629
>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 741
Score = 25.8 bits (54), Expect = 5.0
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = -3
Query: 503 HCRYTISCSQDTPRE--GSTHNGIPWIFLLPHVH 408
HC + C ++ P E GS H P +F++PH H
Sbjct: 143 HCTCPL-CRKEVPHETVGSAHP--PILFIIPHSH 173
>SPAC3H8.04 |||chromosome segregation protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 338
Score = 25.0 bits (52), Expect = 8.7
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +3
Query: 288 PLGFSRKMLGSLAAV-KERSPIVGGNFAVWGGMFSTIDCSLVYMRQK 425
P G+ +G L + ++ + +V F V + S +DCS ++RQK
Sbjct: 224 PFGYRIPSVGQLQLILRQTNGLVIKVFLVPYNVSSMVDCSKTWIRQK 270
>SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 773
Score = 25.0 bits (52), Expect = 8.7
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = -2
Query: 441 NSMDLPFASCTQVSSLW*RTYHPKQQNYPRLLESAPL 331
N ++ P+ C QV + YH K + RL S PL
Sbjct: 35 NGVESPYYICVQVENQGIEVYHMKDE---RLFASCPL 68
>SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 594
Score = 25.0 bits (52), Expect = 8.7
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 4/35 (11%)
Frame = +1
Query: 481 QEMVYRQWQECTYW----RNSLSSNRRHWYHVHKI 573
Q +VY + YW R+ +S+NR+ H+H I
Sbjct: 9 QVLVYNYSKRKNYWHFWLRSFMSNNRKFLVHIHLI 43
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,690,246
Number of Sequences: 5004
Number of extensions: 59373
Number of successful extensions: 169
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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