Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120851.seq
(616 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1194 - 24708281-24708796,24708990-24708996,24709199-24709866 105 2e-23
03_04_0070 + 17042509-17043129 94 7e-20
03_04_0073 + 17059358-17059921 37 0.015
01_06_1476 + 37640278-37642551 31 0.73
12_02_0523 + 19988949-19989234,19992420-19992484,19992570-199926... 30 1.3
07_03_0669 - 20542481-20542489,20543212-20543872,20543899-205439... 30 1.3
12_01_0231 + 1744323-1745276,1745516-1746193 30 1.7
11_01_0234 + 1804581-1805357,1805941-1806447 30 1.7
07_01_0422 + 3220988-3221536 30 1.7
03_04_0072 + 17054137-17054499 29 2.2
11_01_0233 + 1801011-1802081 29 2.9
09_04_0430 + 17502387-17503505 29 3.9
07_03_1530 + 27502546-27502671,27503487-27503561,27504670-275047... 28 5.1
04_01_0381 - 5061901-5061914,5062044-5062100,5062268-5063231 28 5.1
01_07_0188 - 41866689-41866763,41866889-41867155,41867277-418677... 28 5.1
06_03_0677 - 23440273-23440749,23440824-23440985,23442007-23442627 28 6.8
08_02_1417 - 26922775-26922986,26923102-26923291,26923816-269239... 27 8.9
>07_03_1194 - 24708281-24708796,24708990-24708996,24709199-24709866
Length = 396
Score = 105 bits (253), Expect = 2e-23
Identities = 48/85 (56%), Positives = 63/85 (74%)
Frame = +3
Query: 255 LFHSIKGFRNAPLGFSRKMLGSLAAVKERSPIVGGNFAVWGGMFSTIDCSLVYMRQKEDP 434
LFH +KG N+P G +++G AV+ +P VGG+FAVWGG+FS DC++V+MRQKEDP
Sbjct: 32 LFHFLKGTYNSPNG--ERLVGGAQAVRMNAPRVGGSFAVWGGLFSAFDCTMVFMRQKEDP 89
Query: 435 WNSIMSGALTGGILAARNGVPAMAG 509
WNSI++GA TGG L+ R G P AG
Sbjct: 90 WNSIIAGAATGGFLSMRQG-PGAAG 113
Score = 99.5 bits (237), Expect = 2e-21
Identities = 47/87 (54%), Positives = 61/87 (70%)
Frame = +3
Query: 258 FHSIKGFRNAPLGFSRKMLGSLAAVKERSPIVGGNFAVWGGMFSTIDCSLVYMRQKEDPW 437
FH +KG RN+P G + G + V+ +P V G FAVW G+FS DC+LV +RQKEDP+
Sbjct: 257 FHFVKGLRNSPSG--ARFAGGMEGVRMNAPRVAGGFAVWCGLFSACDCALVSVRQKEDPY 314
Query: 438 NSIMSGALTGGILAARNGVPAMAGVHL 518
NSI++GA TGGILAAR G+ A+A L
Sbjct: 315 NSIIAGAATGGILAARQGLRAVARASL 341
Score = 27.5 bits (58), Expect = 8.9
Identities = 11/14 (78%), Positives = 12/14 (85%)
Frame = +1
Query: 175 EYTREPCPWRILDD 216
E +REPCP RILDD
Sbjct: 5 ETSREPCPDRILDD 18
>03_04_0070 + 17042509-17043129
Length = 206
Score = 94.3 bits (224), Expect = 7e-20
Identities = 42/83 (50%), Positives = 56/83 (67%)
Frame = +3
Query: 258 FHSIKGFRNAPLGFSRKMLGSLAAVKERSPIVGGNFAVWGGMFSTIDCSLVYMRQKEDPW 437
FH ++G N+P G ++ G AV+ P GGNFA WGG+FS DC++V+ RQKEDPW
Sbjct: 31 FHFLRGAYNSPNG--HRLSGGSQAVRMSVPRTGGNFAAWGGLFSAFDCAMVHARQKEDPW 88
Query: 438 NSIMSGALTGGILAARNGVPAMA 506
NSI++GA TG +L+ R G A A
Sbjct: 89 NSILAGAATGAVLSLRQGPRATA 111
>03_04_0073 + 17059358-17059921
Length = 187
Score = 36.7 bits (81), Expect = 0.015
Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Frame = +3
Query: 255 LFHSIKGFRNAPLGFSRKMLGSLAAVKERSPIVGGNFAVWGGMFSTIDCSLVYMRQK-ED 431
L H G R+ P G R + G+ AV++ +P + +A ++S +L + +D
Sbjct: 30 LAHLFTGLRDFPCG--RHLAGAAQAVRDGAPCLATRWAARLAVYSAACHALSSATDRHDD 87
Query: 432 PWNSIMSGALTGGILAARNGVPAMAGVHLL 521
P S+ +GA TG + R+G A+ L+
Sbjct: 88 PLVSVAAGAATGAVARLRHGPLAVGRAALV 117
>01_06_1476 + 37640278-37642551
Length = 757
Score = 31.1 bits (67), Expect = 0.73
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -3
Query: 485 SCSQDTPREGSTHNGIPWI 429
S D PR G+ HNGIPW+
Sbjct: 320 SAGNDGPRLGTLHNGIPWL 338
>12_02_0523 +
19988949-19989234,19992420-19992484,19992570-19992642,
19992765-19992818,19993532-19993761
Length = 235
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = +3
Query: 363 FAVWGGMFSTIDCSLVYMRQKEDPWNSIMSGALTG 467
FAV G+ S + C+L +R K+D N+ ++G TG
Sbjct: 119 FAVLAGVQSLVACTLRQLRGKDDVLNAGIAGCCTG 153
>07_03_0669 -
20542481-20542489,20543212-20543872,20543899-20543983,
20545311-20546625
Length = 689
Score = 30.3 bits (65), Expect = 1.3
Identities = 12/19 (63%), Positives = 15/19 (78%), Gaps = 1/19 (5%)
Frame = -1
Query: 472 IPPVRA-PLIMEFHGSSFC 419
IPPVR P+++ FHG SFC
Sbjct: 463 IPPVRRLPIVVYFHGGSFC 481
>12_01_0231 + 1744323-1745276,1745516-1746193
Length = 543
Score = 29.9 bits (64), Expect = 1.7
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -1
Query: 487 FLAARIPPVRAPLIMEFHGSSFCLMYTS 404
+L P R P+++ FHG FCL + +
Sbjct: 83 YLTTTTPAGRRPVLVHFHGGGFCLSHAA 110
>11_01_0234 + 1804581-1805357,1805941-1806447
Length = 427
Score = 29.9 bits (64), Expect = 1.7
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -1
Query: 487 FLAARIPPVRAPLIMEFHGSSFCLMYTS 404
+L P R P+++ FHG FCL + +
Sbjct: 83 YLTTTAPARRRPVLVHFHGGGFCLSHAA 110
>07_01_0422 + 3220988-3221536
Length = 182
Score = 29.9 bits (64), Expect = 1.7
Identities = 15/58 (25%), Positives = 27/58 (46%)
Frame = +3
Query: 264 SIKGFRNAPLGFSRKMLGSLAAVKERSPIVGGNFAVWGGMFSTIDCSLVYMRQKEDPW 437
+++ F G +RK G AA + P+ N+ + + DC ++ R+ DPW
Sbjct: 90 TLEAFPEVVYGEARKARGGAAATQTCCPVCLENYGDGDVLRALPDCGHLFHRECVDPW 147
>03_04_0072 + 17054137-17054499
Length = 120
Score = 29.5 bits (63), Expect = 2.2
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +3
Query: 423 KEDPWNSIMSGALTGGILAARNG 491
KE+ WN + +GA T G L R G
Sbjct: 8 KEESWNFVFAGAATSGFLRLRQG 30
>11_01_0233 + 1801011-1802081
Length = 356
Score = 29.1 bits (62), Expect = 2.9
Identities = 17/44 (38%), Positives = 19/44 (43%)
Frame = -1
Query: 490 PFLAARIPPVRAPLIMEFHGSSFCLMYTSEQSMVENIPPQTAKL 359
P AA P R PL++ HG FCL S P AKL
Sbjct: 78 PPAAAPRPRRRRPLLLHLHGGGFCLSRPSWALYHNFYAPLAAKL 121
>09_04_0430 + 17502387-17503505
Length = 372
Score = 28.7 bits (61), Expect = 3.9
Identities = 12/33 (36%), Positives = 14/33 (42%)
Frame = +3
Query: 420 QKEDPWNSIMSGALTGGILAARNGVPAMAGVHL 518
Q PW GA G+ A NG P A V +
Sbjct: 309 QPNTPWLGTTGGAEADGVAGAENGAPVSAAVEV 341
>07_03_1530 + 27502546-27502671,27503487-27503561,27504670-27504746,
27505576-27507522,27508478-27508946,27509898-27510079,
27510746-27511208,27511295-27511691,27511810-27511937,
27512106-27512273,27512452-27512559,27512830-27512838
Length = 1382
Score = 28.3 bits (60), Expect = 5.1
Identities = 14/44 (31%), Positives = 18/44 (40%), Gaps = 2/44 (4%)
Frame = -2
Query: 588 NCSAVNLVNMIPMPSIRAKRIPPISALLPL--PVHHFLQPGYPP 463
NC N +P+P +PP + P P HF P PP
Sbjct: 1144 NCGYAGHANQMPLPPPPPPPLPPPPPVAPFHPPGPHFSGPSVPP 1187
>04_01_0381 - 5061901-5061914,5062044-5062100,5062268-5063231
Length = 344
Score = 28.3 bits (60), Expect = 5.1
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = -2
Query: 579 AVNLVNMIPMPSIRAKRIPPISALLPLPVHHFLQPGYPP 463
A+ + + P+P + +IP + L PLP PG PP
Sbjct: 109 AIQIPGLPPLPQLPTIQIPGLPTLQPLPTIQI--PGLPP 145
>01_07_0188 -
41866689-41866763,41866889-41867155,41867277-41867722,
41867945-41868033,41868279-41868368,41868661-41868739,
41868979-41869042,41869597-41869684,41869776-41869836,
41869906-41869969,41870134-41870188,41870275-41870346,
41870469-41870551,41870629-41870724,41871279-41871383,
41872159-41872227,41872470-41872561,41872667-41872886
Length = 704
Score = 28.3 bits (60), Expect = 5.1
Identities = 16/53 (30%), Positives = 29/53 (54%)
Frame = -1
Query: 508 PAIAGTPFLAARIPPVRAPLIMEFHGSSFCLMYTSEQSMVENIPPQTAKLPPT 350
P+++G P + +PP+ P+ M+ GSS +M Q ++ QT + PP+
Sbjct: 572 PSMSGPPPVNPPLPPMPHPMAMQVQGSSNQMMPQMPQHLIG--MNQTHQGPPS 622
>06_03_0677 - 23440273-23440749,23440824-23440985,23442007-23442627
Length = 419
Score = 27.9 bits (59), Expect = 6.8
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +2
Query: 410 VHEAKGRSMEFHYEWSPHGG 469
+HE KG S+ H SPHGG
Sbjct: 35 LHEDKGFSLSLHGSASPHGG 54
>08_02_1417 -
26922775-26922986,26923102-26923291,26923816-26923928,
26924032-26924112,26925329-26926661
Length = 642
Score = 27.5 bits (58), Expect = 8.9
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -2
Query: 78 GGLINTYYHHF*KLSLVHN 22
GGL+ YHHF ++S V+N
Sbjct: 324 GGLVEQGYHHFHRMSKVYN 342
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,707,520
Number of Sequences: 37544
Number of extensions: 408403
Number of successful extensions: 1027
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 987
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1025
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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