Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120851.seq
         (616 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40700| Best HMM Match : Tim17 (HMM E-Value=6.8005e-42)              77   2e-14
SB_3371| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.3  
SB_41624| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_43343| Best HMM Match : fn3 (HMM E-Value=3.4e-39)                   29   3.0  
SB_1519| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                 28   6.9  
SB_54456| Best HMM Match : EGF (HMM E-Value=2.3e-31)                   27   9.1  

>SB_40700| Best HMM Match : Tim17 (HMM E-Value=6.8005e-42)
          Length = 289

 Score = 76.6 bits (180), Expect = 2e-14
 Identities = 33/47 (70%), Positives = 38/47 (80%)
 Frame = +3

Query: 360 NFAVWGGMFSTIDCSLVYMRQKEDPWNSIMSGALTGGILAARNGVPA 500
           NFAVWGG+FST DC L+ +R KEDPWNSI SGA+TG +LAAR G  A
Sbjct: 171 NFAVWGGLFSTFDCCLMGLRGKEDPWNSIGSGAITGAVLAARGGPSA 217



 Score = 36.3 bits (80), Expect = 0.020
 Identities = 13/18 (72%), Positives = 16/18 (88%)
 Frame = +1

Query: 163 YIMDEYTREPCPWRILDD 216
           Y M+EY REPCP+RI+DD
Sbjct: 20  YKMEEYAREPCPYRIVDD 37


>SB_3371| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1135

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 5/37 (13%)
 Frame = -2

Query: 558 IPMPSIRAKRIPPISALLPLPV-----HHFLQPGYPP 463
           +P P +R    PP +AL P P      HH L+P  PP
Sbjct: 837 VPHPLLRPCAPPPATALCPTPCYGPVPHHLLRPCAPP 873


>SB_41624| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 917

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = -1

Query: 514 CTPAIAGTPFLAARIPPVRAPLIMEFHGSSFCLMYTSEQSMV 389
           CTP I+GTP++A+ +     P I++   S   L Y    ++V
Sbjct: 466 CTPDISGTPYVASFVLDTMRPGILQISPSRKTLEYQGGVNLV 507


>SB_43343| Best HMM Match : fn3 (HMM E-Value=3.4e-39)
          Length = 2865

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 13/24 (54%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = -2

Query: 120  LQQERISHYFYVLIGGL-INTYYH 52
            + +E IS Y+Y  IGGL   TYYH
Sbjct: 1472 INEEYISGYYYTQIGGLKSGTYYH 1495


>SB_1519| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 943

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = -2

Query: 222 ARVIKDTPRAWFSCIFIHDILIFKVQICDCLFLGLQQERISH 97
           AR I+  P AW S I +   L    + CD   LGL+   IS+
Sbjct: 335 ARYIRINPTAWHSSICLRAELFGCQESCDQSPLGLEDHSISN 376


>SB_54456| Best HMM Match : EGF (HMM E-Value=2.3e-31)
          Length = 491

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = -2

Query: 561 MIPMPSIRAKRIP-PISALLPLPVHHFLQPGYP 466
           M+  P    +RIP P+  ++  P+HH +Q  YP
Sbjct: 271 MVNRPVHHTERIPFPVPFVVNRPIHHTVQVPYP 303


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,318,901
Number of Sequences: 59808
Number of extensions: 459326
Number of successful extensions: 1000
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 932
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 999
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1512078125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)