Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120851.seq
         (616 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF038611-6|AAB92039.1|  181|Caenorhabditis elegans Hypothetical ...    96   2e-20
U40800-15|AAA81499.1|  158|Caenorhabditis elegans Hypothetical p...    69   4e-12
Z49125-3|CAB97233.1|  213|Caenorhabditis elegans Hypothetical pr...    43   2e-04
U97196-12|AAB52456.2|  564|Caenorhabditis elegans Hypothetical p...    31   0.65 
AC006696-10|AAF39990.1|  228|Caenorhabditis elegans Hypothetical...    31   0.65 
Z74029-2|CAA98432.1|  334|Caenorhabditis elegans Hypothetical pr...    28   6.1  
U64858-6|AAB18283.2|  392|Caenorhabditis elegans Hypothetical pr...    27   8.1  

>AF038611-6|AAB92039.1|  181|Caenorhabditis elegans Hypothetical
           protein E04A4.5 protein.
          Length = 181

 Score = 96.3 bits (229), Expect = 2e-20
 Identities = 46/89 (51%), Positives = 62/89 (69%)
 Frame = +3

Query: 255 LFHSIKGFRNAPLGFSRKMLGSLAAVKERSPIVGGNFAVWGGMFSTIDCSLVYMRQKEDP 434
           +F +  G++NA  G  +K++G +  V+ RS + G  FA WGGMFSTIDC LV +R+KEDP
Sbjct: 30  IFQAFGGYKNAAKG--KKLVGMMREVRMRSTLTGVQFAAWGGMFSTIDCCLVAIRKKEDP 87

Query: 435 WNSIMSGALTGGILAARNGVPAMAGVHLL 521
            NSI+SG LTG +LA R+G   MAG  +L
Sbjct: 88  INSIVSGGLTGALLAIRSGPKVMAGSAIL 116



 Score = 34.7 bits (76), Expect = 0.053
 Identities = 13/16 (81%), Positives = 15/16 (93%)
 Frame = +1

Query: 169 MDEYTREPCPWRILDD 216
           M+EYTREPCP+RI DD
Sbjct: 1   MEEYTREPCPYRIGDD 16


>U40800-15|AAA81499.1|  158|Caenorhabditis elegans Hypothetical
           protein D2096.1 protein.
          Length = 158

 Score = 68.5 bits (160), Expect = 4e-12
 Identities = 34/60 (56%), Positives = 41/60 (68%)
 Frame = +3

Query: 339 RSPIVGGNFAVWGGMFSTIDCSLVYMRQKEDPWNSIMSGALTGGILAARNGVPAMAGVHL 518
           RS + G  FA WGG+FSTIDC LV  R+KED  NSI+SG LTG +LA R+  P M  + L
Sbjct: 2   RSTLAGVQFAAWGGLFSTIDCCLVANRKKEDSINSIVSGGLTGALLAIRS--PKMERIRL 59


>Z49125-3|CAB97233.1|  213|Caenorhabditis elegans Hypothetical
           protein C47G2.3 protein.
          Length = 213

 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 26/69 (37%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
 Frame = +3

Query: 330 VKERSPIVGGNFAVWGGMFSTIDCSLVYMRQKEDPWNSIMSGALTGGILAARNGV-PAMA 506
           +  R    G NF   G MFS  +C+L  +R K D  N   SG + GG+L  R G+ PA+ 
Sbjct: 136 MSSRMKSYGKNFGSIGLMFSGTECALETIRAKSDWRNGTYSGGIVGGLLGLRAGIMPAVW 195

Query: 507 GVHLLEEFS 533
           G      FS
Sbjct: 196 GAAGFAVFS 204


>U97196-12|AAB52456.2|  564|Caenorhabditis elegans Hypothetical
           protein B0207.1 protein.
          Length = 564

 Score = 31.1 bits (67), Expect = 0.65
 Identities = 15/56 (26%), Positives = 24/56 (42%)
 Frame = -1

Query: 475 RIPPVRAPLIMEFHGSSFCLMYTSEQSMVENIPPQTAKLPPTIGERSFTAAKLPSI 308
           +IPP   P++ +           +   +   +PP T  LPPT+ E   T  K P +
Sbjct: 44  QIPPAPRPIVNQIQYPKPTNPVQNPNKLSTGLPPMTMMLPPTVQEPLPTPVKTPPL 99


>AC006696-10|AAF39990.1|  228|Caenorhabditis elegans Hypothetical
           protein W08E12.1 protein.
          Length = 228

 Score = 31.1 bits (67), Expect = 0.65
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -3

Query: 515 VHSCHCRYTISCSQDTPREGSTHNGIP 435
           VH   C  T+SC  D P E S +N +P
Sbjct: 37  VHHTECYQTLSCPSDLPVETSYYNSVP 63


>Z74029-2|CAA98432.1|  334|Caenorhabditis elegans Hypothetical
           protein C45B11.4 protein.
          Length = 334

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 25/87 (28%), Positives = 38/87 (43%), Gaps = 3/87 (3%)
 Frame = -1

Query: 421 CLMYTSEQSMVENIPPQTAKLPPTIGERSFTAAKLPSIFLLKPSG-AFLKPFIE*NSHHR 245
           C +Y    S    + P+T K   T    +   A +P IFLL P+   FL  F   N + +
Sbjct: 233 CCLYYIYFSTTITLSPKTKKYQRTFFLGTIAQALVPLIFLLAPAALVFLSIFF--NYYDQ 290

Query: 244 SLP--L*THRQSHQGYATGMVLLYIHP 170
           SL   +      H   +T +++L  HP
Sbjct: 291 SLNNFIVLFISFHDFVSTFIIILIHHP 317


>U64858-6|AAB18283.2|  392|Caenorhabditis elegans Hypothetical
           protein C16D9.5 protein.
          Length = 392

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 16/45 (35%), Positives = 25/45 (55%)
 Frame = -1

Query: 529 NSSNKCTPAIAGTPFLAARIPPVRAPLIMEFHGSSFCLMYTSEQS 395
           ++S+  TP +A TP  AA++ PV    I +  G S+   YT  Q+
Sbjct: 60  STSSTKTPHVA-TPPPAAKVEPVDCNCISKTTGKSYNFCYTDPQN 103


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,979,429
Number of Sequences: 27780
Number of extensions: 337780
Number of successful extensions: 786
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 746
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 786
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1332243108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)