Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120851.seq
         (616 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    24   1.4  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   4.1  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    22   4.1  
EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate isome...    22   5.5  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    22   5.5  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   9.6  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    21   9.6  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   9.6  

>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +1

Query: 517 YWRNSLSSNRRHWYHVHKI 573
           YWR  +  N  HW H H +
Sbjct: 198 YWREDIGINLHHW-HWHLV 215


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = +2

Query: 437 EFHYEWSPHGGYPGCKKWCTGNG 505
           E H EW  +   PG  KW   +G
Sbjct: 558 ENHIEWFDYAFIPGNLKWLDIHG 580


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 9/21 (42%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
 Frame = -1

Query: 472 IPPV-RAPLIMEFHGSSFCLM 413
           +PP  + PLI  ++G S CL+
Sbjct: 266 LPPTEKTPLISLYYGVSICLV 286


>EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate
           isomerase protein.
          Length = 247

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -3

Query: 446 NGIPWIFLLPHVHK*AVYG 390
           NGIPW+ +L H  +  ++G
Sbjct: 85  NGIPWV-ILGHSERRNIFG 102


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +2

Query: 269 KRFQKRTTRLQ*KNAW 316
           K+FQK TT L+   +W
Sbjct: 347 KQFQKNTTGLERSRSW 362


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = -2

Query: 570 LVNMIPMPSIRAKRIPPISALLPLPVHHFL 481
           L++++    + +K +PP S +LPL   + L
Sbjct: 272 LLSLVVFLLLVSKILPPTSLVLPLIAKYLL 301


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = -3

Query: 464 REGSTHNGIPWI 429
           R  STHN  PW+
Sbjct: 339 RSPSTHNMSPWV 350


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 10/41 (24%), Positives = 19/41 (46%)
 Frame = -1

Query: 412 YTSEQSMVENIPPQTAKLPPTIGERSFTAAKLPSIFLLKPS 290
           + S Q+     PP  ++ PP  G      ++ PS  ++ P+
Sbjct: 28  HQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNPSQMMISPA 68


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,247
Number of Sequences: 438
Number of extensions: 4197
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18215697
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)