BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= NV120851.seq (616 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At2g37410.2 68415.m04588 mitochondrial import inner membrane tra... 101 3e-22 At2g37410.1 68415.m04587 mitochondrial import inner membrane tra... 101 3e-22 At1g20350.1 68414.m02539 mitochondrial import inner membrane tra... 100 2e-21 At5g11690.1 68418.m01366 mitochondrial import inner membrane tra... 87 7e-18 At3g10110.1 68416.m01211 mitochondrial import inner membrane tra... 40 0.001 At1g18320.1 68414.m02289 mitochondrial import inner membrane tra... 40 0.001 At1g17530.1 68414.m02155 mitochondrial import inner membrane tra... 37 0.009 At5g51150.1 68418.m06342 expressed protein similar to unknown pr... 34 0.086 At1g12250.1 68414.m01417 thylakoid lumenal protein-related weak ... 32 0.26 At3g62880.1 68416.m07064 mitochondrial import inner membrane tra... 30 1.1 At5g16080.1 68418.m01879 expressed protein similar to PrMC3 [Pin... 30 1.4 At5g13480.1 68418.m01554 WD-40 repeat family protein similar to ... 29 1.9 At5g62940.1 68418.m07897 Dof-type zinc finger domain-containing ... 29 2.4 At5g55510.1 68418.m06914 mitochondrial import inner membrane tra... 29 2.4 At4g26670.1 68417.m03842 mitochondrial import inner membrane tra... 28 4.3 At3g17850.1 68416.m02275 protein kinase, putative similar to IRE... 28 4.3 At3g12070.2 68416.m01503 geranylgeranyl transferase type II beta... 28 4.3 At3g12070.1 68416.m01502 geranylgeranyl transferase type II beta... 28 4.3 At3g42880.1 68416.m04495 leucine-rich repeat transmembrane prote... 28 5.7 At1g64790.1 68414.m07346 translational activator family protein ... 28 5.7 At3g60140.1 68416.m06715 glycosyl hydrolase family 1 protein con... 27 7.5 At5g12210.2 68418.m01433 geranylgeranyl transferase type II beta... 27 9.9 At5g12210.1 68418.m01432 geranylgeranyl transferase type II beta... 27 9.9 At4g21300.1 68417.m03077 pentatricopeptide (PPR) repeat-containi... 27 9.9 At1g65590.1 68414.m07441 glycosyl hydrolase family 20 protein co... 27 9.9 >At2g37410.2 68415.m04588 mitochondrial import inner membrane translocase (TIM17) nearly identical to SP|Q9SP35 Mitochondrial import inner membrane translocase subunit TIM17 {Arabidopsis thaliana} Length = 243 Score = 101 bits (243), Expect = 3e-22 Identities = 45/81 (55%), Positives = 58/81 (71%) Frame = +3 Query: 258 FHSIKGFRNAPLGFSRKMLGSLAAVKERSPIVGGNFAVWGGMFSTIDCSLVYMRQKEDPW 437 FH IKG N+P G + +G +V +P GG+FAVWGG+FST DC++VY+RQKEDPW Sbjct: 33 FHFIKGTYNSPKG--SRFVGGTQSVSMNAPRTGGSFAVWGGLFSTFDCTMVYLRQKEDPW 90 Query: 438 NSIMSGALTGGILAARNGVPA 500 NSI++GA TGG L+ R G A Sbjct: 91 NSIIAGAATGGFLSMRQGAGA 111 Score = 27.5 bits (58), Expect = 7.5 Identities = 11/14 (78%), Positives = 12/14 (85%) Frame = +1 Query: 175 EYTREPCPWRILDD 216 E +REPCP RILDD Sbjct: 5 ETSREPCPDRILDD 18 >At2g37410.1 68415.m04587 mitochondrial import inner membrane translocase (TIM17) nearly identical to SP|Q9SP35 Mitochondrial import inner membrane translocase subunit TIM17 {Arabidopsis thaliana} Length = 243 Score = 101 bits (243), Expect = 3e-22 Identities = 45/81 (55%), Positives = 58/81 (71%) Frame = +3 Query: 258 FHSIKGFRNAPLGFSRKMLGSLAAVKERSPIVGGNFAVWGGMFSTIDCSLVYMRQKEDPW 437 FH IKG N+P G + +G +V +P GG+FAVWGG+FST DC++VY+RQKEDPW Sbjct: 33 FHFIKGTYNSPKG--SRFVGGTQSVSMNAPRTGGSFAVWGGLFSTFDCTMVYLRQKEDPW 90 Query: 438 NSIMSGALTGGILAARNGVPA 500 NSI++GA TGG L+ R G A Sbjct: 91 NSIIAGAATGGFLSMRQGAGA 111 Score = 27.5 bits (58), Expect = 7.5 Identities = 11/14 (78%), Positives = 12/14 (85%) Frame = +1 Query: 175 EYTREPCPWRILDD 216 E +REPCP RILDD Sbjct: 5 ETSREPCPDRILDD 18 >At1g20350.1 68414.m02539 mitochondrial import inner membrane translocase subunit Tim17, putative similar to SP|Q9SP35 Mitochondrial import inner membrane translocase subunit TIM17 {Arabidopsis thaliana}; contains Pfam profile PF02466: Mitochondrial import inner membrane translocase subunit Tim17 Length = 218 Score = 99.5 bits (237), Expect = 2e-21 Identities = 44/83 (53%), Positives = 60/83 (72%) Frame = +3 Query: 258 FHSIKGFRNAPLGFSRKMLGSLAAVKERSPIVGGNFAVWGGMFSTIDCSLVYMRQKEDPW 437 +H I+G N+P G ++ G + A++ P GG+F+VWGG++ST DC+LVY RQKEDPW Sbjct: 33 YHLIRGIYNSPGG--ARLSGGVQALRMSGPRSGGSFSVWGGLYSTFDCALVYARQKEDPW 90 Query: 438 NSIMSGALTGGILAARNGVPAMA 506 NSI+SGA TGG L+ R G+ A A Sbjct: 91 NSILSGAATGGFLSLRQGLGASA 113 Score = 27.5 bits (58), Expect = 7.5 Identities = 11/14 (78%), Positives = 12/14 (85%) Frame = +1 Query: 175 EYTREPCPWRILDD 216 E +REPCP RILDD Sbjct: 5 ESSREPCPDRILDD 18 >At5g11690.1 68418.m01366 mitochondrial import inner membrane translocase subunit Tim17, putative similar to SP|Q9SP35 Mitochondrial import inner membrane translocase subunit TIM17 {Arabidopsis thaliana}; contains Pfam profile PF02466: Mitochondrial import inner membrane translocase subunit Tim17 Length = 133 Score = 87.4 bits (207), Expect = 7e-18 Identities = 39/82 (47%), Positives = 58/82 (70%) Frame = +3 Query: 255 LFHSIKGFRNAPLGFSRKMLGSLAAVKERSPIVGGNFAVWGGMFSTIDCSLVYMRQKEDP 434 ++H ++G N+P+G + +G A +P +GG FAV+GG+ ST D +LV +R+KEDP Sbjct: 32 VYHFVRGAYNSPIG--ARYVGGTQAASMNAPRLGGTFAVFGGLLSTFDYALVRIRKKEDP 89 Query: 435 WNSIMSGALTGGILAARNGVPA 500 WNSI++GA TGG+L+ R GV A Sbjct: 90 WNSIVAGAATGGVLSIRKGVVA 111 >At3g10110.1 68416.m01211 mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein weak similarity to TIM22 preprotein translocase [Rattus norvegicus] GI:6760457; contains Pfam profile PF02466: Mitochondrial import inner membrane translocase subunit Tim17 Length = 173 Score = 40.3 bits (90), Expect = 0.001 Identities = 19/46 (41%), Positives = 28/46 (60%) Frame = +3 Query: 363 FAVWGGMFSTIDCSLVYMRQKEDPWNSIMSGALTGGILAARNGVPA 500 FAV G +FS +C + R K D N+ ++G +TGG ++AR G A Sbjct: 105 FAVMGLVFSAAECIVEKARAKHDTVNTAIAGCVTGGSMSARGGPKA 150 >At1g18320.1 68414.m02289 mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein contains Pfam domain PF02466: Mitochondrial import inner membrane translocase subunit Tim17 Length = 129 Score = 40.3 bits (90), Expect = 0.001 Identities = 19/46 (41%), Positives = 28/46 (60%) Frame = +3 Query: 363 FAVWGGMFSTIDCSLVYMRQKEDPWNSIMSGALTGGILAARNGVPA 500 FAV G +FS +C + R K D N+ ++G +TGG ++AR G A Sbjct: 61 FAVMGLVFSAAECIVEKARAKHDTVNTAIAGCVTGGSMSARGGPKA 106 >At1g17530.1 68414.m02155 mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein contains Pfam PF02466: Mitochondrial import inner membrane translocase subunit Tim17 Length = 187 Score = 37.1 bits (82), Expect = 0.009 Identities = 22/84 (26%), Positives = 39/84 (46%) Frame = +3 Query: 255 LFHSIKGFRNAPLGFSRKMLGSLAAVKERSPIVGGNFAVWGGMFSTIDCSLVYMRQKEDP 434 +F IK F N K+ L + + G + G +++ I+ +V + K+D Sbjct: 79 IFSGIKSFENGDTT-KLKINRILNSSGQAGRTWGNRVGIVGLIYAGIESGVVAVTDKDDV 137 Query: 435 WNSIMSGALTGGILAARNGVPAMA 506 W S+++G TG + A GV + A Sbjct: 138 WTSVVAGLGTGAVFRAARGVRSAA 161 >At5g51150.1 68418.m06342 expressed protein similar to unknown protein (gb|AAD46013.1) Length = 531 Score = 33.9 bits (74), Expect = 0.086 Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 1/51 (1%) Frame = +3 Query: 330 VKERSPIVGGNFAVWGGMFSTIDCSLVYMRQKEDPWNSIMSGALTG-GILA 479 V+E + +G F + G + + C L R+KE P NS+++G++ G ILA Sbjct: 124 VREEACRIGLLFGGFTGSYHALRCCLRKWRKKETPLNSVLAGSVAGLSILA 174 >At1g12250.1 68414.m01417 thylakoid lumenal protein-related weak similarity to SP|O22160 Thylakoid lumenal 15 kDa protein, chloroplast precursor (p15) {Arabidopsis thaliana}; contains Pfam profile PF00805: Pentapeptide repeats (8 copies) Length = 280 Score = 32.3 bits (70), Expect = 0.26 Identities = 12/34 (35%), Positives = 22/34 (64%) Frame = +3 Query: 423 KEDPWNSIMSGALTGGILAARNGVPAMAGVHLLE 524 + + W I+S A+ ++A+ +GVPAMA ++ E Sbjct: 63 ESNTWKRILSAAMAAAVIASSSGVPAMAELNRFE 96 >At3g62880.1 68416.m07064 mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein contains PFam PF02466: Mitochondrial import inner membrane translocase subunit Tim17 Length = 136 Score = 30.3 bits (65), Expect = 1.1 Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 2/74 (2%) Frame = +3 Query: 378 GMFSTIDCSLVYMRQKEDPWNSIMSGALTGGILA--ARNGVPAMAGVHLLEEFS*L**KA 551 G+F+ C L R K D N+++ GA+ G +A RN + L+ FS Sbjct: 68 GVFTMTHCGLQRYRGKNDWVNALVGGAVAGAAVAISTRNWTQVVGMAGLVSAFS-----V 122 Query: 552 LVSCSQD*RLNSSN 593 L +C++ N++N Sbjct: 123 LANCTRTENPNNTN 136 >At5g16080.1 68418.m01879 expressed protein similar to PrMC3 [Pinus radiata] GI:5487873 Length = 344 Score = 29.9 bits (64), Expect = 1.4 Identities = 12/25 (48%), Positives = 15/25 (60%) Frame = -1 Query: 490 PFLAARIPPVRAPLIMEFHGSSFCL 416 P AA P V PL++ FHG FC+ Sbjct: 81 PDAAAASPSVTLPLLVYFHGGGFCV 105 >At5g13480.1 68418.m01554 WD-40 repeat family protein similar to WD-repeat protein WDC146 (SP:Q9C0J8|) {Homo sapiens}; contains 3 weak Pfam PF00400: WD domain, G-beta repeats; Length = 711 Score = 29.5 bits (63), Expect = 1.9 Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 1/36 (2%) Frame = -2 Query: 561 MIPMPSIRAKRIPPISALLPLPVHHFLQP-GYPP*G 457 M+PMP++ ++PP S+ +PL HH +P PP G Sbjct: 584 MLPMPNMPHHQLPP-SSHMPLHPHHLPRPMQMPPHG 618 >At5g62940.1 68418.m07897 Dof-type zinc finger domain-containing protein Dof zinc finger protein, Oryza sativa, EMBL:AB028129 Length = 372 Score = 29.1 bits (62), Expect = 2.4 Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 2/68 (2%) Frame = +3 Query: 234 NGSDRWWLFHSIKGFRNAPLGFSR--KMLGSLAAVKERSPIVGGNFAVWGGMFSTIDCSL 407 N SD L HS + ++++PLGFS M+GS + + + VG + +GG+ S + Sbjct: 150 NTSDLMALAHSHQNYQHSPLGFSHFGGMMGSYSTPEHGN--VGFLESKYGGLLSQSPRPI 207 Query: 408 VYMRQKED 431 ++ K D Sbjct: 208 DFLDSKFD 215 >At5g55510.1 68418.m06914 mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein weak similarity to SP|Q99595 Mitochondrial import inner membrane translocase subunit TIM17 A {Homo sapiens}; contains Pfam profile PF02466: Mitochondrial import inner membrane translocase subunit Tim17 Length = 186 Score = 29.1 bits (62), Expect = 2.4 Identities = 17/47 (36%), Positives = 24/47 (51%) Frame = +3 Query: 363 FAVWGGMFSTIDCSLVYMRQKEDPWNSIMSGALTGGILAARNGVPAM 503 FAV G+ S + C L +R K+D N ++G TG L+ AM Sbjct: 63 FAVLSGVHSLVVCLLKQIRGKDDAINVGVAGCCTGLALSFPGAPQAM 109 >At4g26670.1 68417.m03842 mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein weak similarity to SP|Q9Z0V8 Mitochondrial import inner membrane translocase subunit TIM17 A {Mus musculus}; contains Pfam profile PF02466: Mitochondrial import inner membrane translocase subunit Tim17 Length = 210 Score = 28.3 bits (60), Expect = 4.3 Identities = 14/35 (40%), Positives = 20/35 (57%) Frame = +3 Query: 363 FAVWGGMFSTIDCSLVYMRQKEDPWNSIMSGALTG 467 FAV G+ S + C L +R K+D N ++G TG Sbjct: 91 FAVLSGVHSLVVCLLKQIRGKDDAINVGVAGCCTG 125 >At3g17850.1 68416.m02275 protein kinase, putative similar to IRE (incomplete root hair elongation) [Arabidopsis thaliana] gi|6729346|dbj|BAA89783; contains protein kinase domain Pfam:PF00069 Length = 1296 Score = 28.3 bits (60), Expect = 4.3 Identities = 15/50 (30%), Positives = 25/50 (50%) Frame = -1 Query: 460 RAPLIMEFHGSSFCLMYTSEQSMVENIPPQTAKLPPTIGERSFTAAKLPS 311 R +++FH S+ Q + K+PP+ RS++AAK+PS Sbjct: 421 RCTRLLQFHKESWGEEEQVVQLRQSRVLHSIEKIPPSGAGRSYSAAKVPS 470 Score = 28.3 bits (60), Expect = 4.3 Identities = 15/52 (28%), Positives = 26/52 (50%) Frame = -1 Query: 529 NSSNKCTPAIAGTPFLAARIPPVRAPLIMEFHGSSFCLMYTSEQSMVENIPP 374 +S K P+ AG + AA++P + E HG + E ++V ++PP Sbjct: 449 HSIEKIPPSGAGRSYSAAKVPSTKKAYSQEQHGLDW-----KEDAVVRSVPP 495 >At3g12070.2 68416.m01503 geranylgeranyl transferase type II beta subunit, putative / RAB geranylgeranyltransferase beta subunit, putative similar to geranylgeranyl transferase type II beta subunit SP:P53611 [GI:1552549] [Homo sapiens] Length = 317 Score = 28.3 bits (60), Expect = 4.3 Identities = 11/19 (57%), Positives = 14/19 (73%) Frame = +2 Query: 320 FGCSKGALSNSRG*FCCLG 376 FGCS GA S++ FCC+G Sbjct: 170 FGCSPGAESHAGQIFCCVG 188 >At3g12070.1 68416.m01502 geranylgeranyl transferase type II beta subunit, putative / RAB geranylgeranyltransferase beta subunit, putative similar to geranylgeranyl transferase type II beta subunit SP:P53611 [GI:1552549] [Homo sapiens] Length = 317 Score = 28.3 bits (60), Expect = 4.3 Identities = 11/19 (57%), Positives = 14/19 (73%) Frame = +2 Query: 320 FGCSKGALSNSRG*FCCLG 376 FGCS GA S++ FCC+G Sbjct: 170 FGCSPGAESHAGQIFCCVG 188 >At3g42880.1 68416.m04495 leucine-rich repeat transmembrane protein kinase, putative receptor-like protein kinase PRK1, Lycopersicon esculentum, PIR:T07865 Length = 633 Score = 27.9 bits (59), Expect = 5.7 Identities = 21/53 (39%), Positives = 25/53 (47%), Gaps = 2/53 (3%) Frame = -2 Query: 456 LHS*WNSMDLPFASCTQVSSLW*RTYHPKQQNYPRLLESAPLLQPN--CQAFF 304 LH + S DLP + + L TY P +Y L PLLQPN QA F Sbjct: 473 LHEEFASYDLPHGNLKSSNVLLSETYEPLISDYAFL----PLLQPNNASQALF 521 >At1g64790.1 68414.m07346 translational activator family protein similar to HsGCN1 [Homo sapiens] GI:2282576 Length = 2440 Score = 27.9 bits (59), Expect = 5.7 Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 4/52 (7%) Frame = -1 Query: 409 TSEQSMVENIPPQTAKLPPTIGER---SFTAAKLPS-IFLLKPSGAFLKPFI 266 TSEQ++ E + P T L IG+R +A L + I L++ G LKPF+ Sbjct: 2072 TSEQALKEFVIPITGPLIRIIGDRFPWQVKSAILATLIILIQRGGMALKPFL 2123 >At3g60140.1 68416.m06715 glycosyl hydrolase family 1 protein contains Pfam PF00232 : Glycosyl hydrolase family 1 domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase; similar to Cyanogenic Beta-Glucosidase (GI:1311386)(pdb:1CBG) [Trifolium Repens]; identical beta-glucosidase GI:10834547 Length = 577 Score = 27.5 bits (58), Expect = 7.5 Identities = 20/63 (31%), Positives = 24/63 (38%), Gaps = 4/63 (6%) Frame = +2 Query: 326 CSKGALSNSRG*FCCLGWYVLYHRLLTCVHEAKGRSMEFHYEW--SP--HGGYPGCKKWC 493 C K + G W+ YH T EA R++ F W P HG YP K Sbjct: 251 CEKTSHDGQIGIVLSPRWFEPYHSDSTDDKEAAERALAFEIGWHLDPVIHGDYPEIVKKY 310 Query: 494 TGN 502 GN Sbjct: 311 AGN 313 >At5g12210.2 68418.m01433 geranylgeranyl transferase type II beta subunit, putative / RAB geranylgeranyltransferase beta subunit, putative similar to rab geranylgeranyl transferase GB:CAA69383 GI:1552549 from [Homo sapiens] Length = 320 Score = 27.1 bits (57), Expect = 9.9 Identities = 10/19 (52%), Positives = 14/19 (73%) Frame = +2 Query: 320 FGCSKGALSNSRG*FCCLG 376 FGC+ GA S++ FCC+G Sbjct: 174 FGCTPGAESHAGQIFCCVG 192 >At5g12210.1 68418.m01432 geranylgeranyl transferase type II beta subunit, putative / RAB geranylgeranyltransferase beta subunit, putative similar to rab geranylgeranyl transferase GB:CAA69383 GI:1552549 from [Homo sapiens] Length = 321 Score = 27.1 bits (57), Expect = 9.9 Identities = 10/19 (52%), Positives = 14/19 (73%) Frame = +2 Query: 320 FGCSKGALSNSRG*FCCLG 376 FGC+ GA S++ FCC+G Sbjct: 175 FGCTPGAESHAGQIFCCVG 193 >At4g21300.1 68417.m03077 pentatricopeptide (PPR) repeat-containing protein contains INTERPRO:IPR002885 PPR repeats Length = 857 Score = 27.1 bits (57), Expect = 9.9 Identities = 15/40 (37%), Positives = 22/40 (55%) Frame = +3 Query: 357 GNFAVWGGMFSTIDCSLVYMRQKEDPWNSIMSGALTGGIL 476 G+F+ G MF +D +R PWNSI+S + G+L Sbjct: 84 GSFSDCGKMFYRLDLRRSSIR----PWNSIISSFVRNGLL 119 >At1g65590.1 68414.m07441 glycosyl hydrolase family 20 protein contains Pfam PF00728: Glycosyl hydrolase family 20, catalytic domain; contains Pfam PF02838: Glycosyl hydrolase family 20, domain 2; similar to Beta-hexosaminidase beta chain precursor (EC 3.2.1.52) (N-acetyl-beta- glucosaminidase) (Beta-N-acetylhexosaminidase) (Hexosaminidase B) (Swiss-Prot:P07686) [Homo sapiens] Length = 535 Score = 27.1 bits (57), Expect = 9.9 Identities = 11/52 (21%), Positives = 27/52 (51%) Frame = +3 Query: 222 RCVYNGSDRWWLFHSIKGFRNAPLGFSRKMLGSLAAVKERSPIVGGNFAVWG 377 RC+ + + W+L H ++ ++ + ++ K++S ++GG +WG Sbjct: 412 RCIVSNQEFWYLDHIDAPWQGF---YANEPFQNITDKKQQSLVLGGEVCMWG 460 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 14,130,275 Number of Sequences: 28952 Number of extensions: 318907 Number of successful extensions: 696 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 658 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 693 length of database: 12,070,560 effective HSP length: 78 effective length of database: 9,812,304 effective search space used: 1236350304 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -