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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120851.seq
         (616 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g37410.2 68415.m04588 mitochondrial import inner membrane tra...   101   3e-22
At2g37410.1 68415.m04587 mitochondrial import inner membrane tra...   101   3e-22
At1g20350.1 68414.m02539 mitochondrial import inner membrane tra...   100   2e-21
At5g11690.1 68418.m01366 mitochondrial import inner membrane tra...    87   7e-18
At3g10110.1 68416.m01211 mitochondrial import inner membrane tra...    40   0.001
At1g18320.1 68414.m02289 mitochondrial import inner membrane tra...    40   0.001
At1g17530.1 68414.m02155 mitochondrial import inner membrane tra...    37   0.009
At5g51150.1 68418.m06342 expressed protein similar to unknown pr...    34   0.086
At1g12250.1 68414.m01417 thylakoid lumenal protein-related weak ...    32   0.26 
At3g62880.1 68416.m07064 mitochondrial import inner membrane tra...    30   1.1  
At5g16080.1 68418.m01879 expressed protein similar to PrMC3 [Pin...    30   1.4  
At5g13480.1 68418.m01554 WD-40 repeat family protein similar to ...    29   1.9  
At5g62940.1 68418.m07897 Dof-type zinc finger domain-containing ...    29   2.4  
At5g55510.1 68418.m06914 mitochondrial import inner membrane tra...    29   2.4  
At4g26670.1 68417.m03842 mitochondrial import inner membrane tra...    28   4.3  
At3g17850.1 68416.m02275 protein kinase, putative similar to IRE...    28   4.3  
At3g12070.2 68416.m01503 geranylgeranyl transferase type II beta...    28   4.3  
At3g12070.1 68416.m01502 geranylgeranyl transferase type II beta...    28   4.3  
At3g42880.1 68416.m04495 leucine-rich repeat transmembrane prote...    28   5.7  
At1g64790.1 68414.m07346 translational activator family protein ...    28   5.7  
At3g60140.1 68416.m06715 glycosyl hydrolase family 1 protein con...    27   7.5  
At5g12210.2 68418.m01433 geranylgeranyl transferase type II beta...    27   9.9  
At5g12210.1 68418.m01432 geranylgeranyl transferase type II beta...    27   9.9  
At4g21300.1 68417.m03077 pentatricopeptide (PPR) repeat-containi...    27   9.9  
At1g65590.1 68414.m07441 glycosyl hydrolase family 20 protein co...    27   9.9  

>At2g37410.2 68415.m04588 mitochondrial import inner membrane
           translocase (TIM17) nearly identical to SP|Q9SP35
           Mitochondrial import inner membrane translocase subunit
           TIM17 {Arabidopsis thaliana}
          Length = 243

 Score =  101 bits (243), Expect = 3e-22
 Identities = 45/81 (55%), Positives = 58/81 (71%)
 Frame = +3

Query: 258 FHSIKGFRNAPLGFSRKMLGSLAAVKERSPIVGGNFAVWGGMFSTIDCSLVYMRQKEDPW 437
           FH IKG  N+P G   + +G   +V   +P  GG+FAVWGG+FST DC++VY+RQKEDPW
Sbjct: 33  FHFIKGTYNSPKG--SRFVGGTQSVSMNAPRTGGSFAVWGGLFSTFDCTMVYLRQKEDPW 90

Query: 438 NSIMSGALTGGILAARNGVPA 500
           NSI++GA TGG L+ R G  A
Sbjct: 91  NSIIAGAATGGFLSMRQGAGA 111



 Score = 27.5 bits (58), Expect = 7.5
 Identities = 11/14 (78%), Positives = 12/14 (85%)
 Frame = +1

Query: 175 EYTREPCPWRILDD 216
           E +REPCP RILDD
Sbjct: 5   ETSREPCPDRILDD 18


>At2g37410.1 68415.m04587 mitochondrial import inner membrane
           translocase (TIM17) nearly identical to SP|Q9SP35
           Mitochondrial import inner membrane translocase subunit
           TIM17 {Arabidopsis thaliana}
          Length = 243

 Score =  101 bits (243), Expect = 3e-22
 Identities = 45/81 (55%), Positives = 58/81 (71%)
 Frame = +3

Query: 258 FHSIKGFRNAPLGFSRKMLGSLAAVKERSPIVGGNFAVWGGMFSTIDCSLVYMRQKEDPW 437
           FH IKG  N+P G   + +G   +V   +P  GG+FAVWGG+FST DC++VY+RQKEDPW
Sbjct: 33  FHFIKGTYNSPKG--SRFVGGTQSVSMNAPRTGGSFAVWGGLFSTFDCTMVYLRQKEDPW 90

Query: 438 NSIMSGALTGGILAARNGVPA 500
           NSI++GA TGG L+ R G  A
Sbjct: 91  NSIIAGAATGGFLSMRQGAGA 111



 Score = 27.5 bits (58), Expect = 7.5
 Identities = 11/14 (78%), Positives = 12/14 (85%)
 Frame = +1

Query: 175 EYTREPCPWRILDD 216
           E +REPCP RILDD
Sbjct: 5   ETSREPCPDRILDD 18


>At1g20350.1 68414.m02539 mitochondrial import inner membrane
           translocase subunit Tim17, putative similar to SP|Q9SP35
           Mitochondrial import inner membrane translocase subunit
           TIM17 {Arabidopsis thaliana}; contains Pfam profile
           PF02466: Mitochondrial import inner membrane translocase
           subunit Tim17
          Length = 218

 Score = 99.5 bits (237), Expect = 2e-21
 Identities = 44/83 (53%), Positives = 60/83 (72%)
 Frame = +3

Query: 258 FHSIKGFRNAPLGFSRKMLGSLAAVKERSPIVGGNFAVWGGMFSTIDCSLVYMRQKEDPW 437
           +H I+G  N+P G   ++ G + A++   P  GG+F+VWGG++ST DC+LVY RQKEDPW
Sbjct: 33  YHLIRGIYNSPGG--ARLSGGVQALRMSGPRSGGSFSVWGGLYSTFDCALVYARQKEDPW 90

Query: 438 NSIMSGALTGGILAARNGVPAMA 506
           NSI+SGA TGG L+ R G+ A A
Sbjct: 91  NSILSGAATGGFLSLRQGLGASA 113



 Score = 27.5 bits (58), Expect = 7.5
 Identities = 11/14 (78%), Positives = 12/14 (85%)
 Frame = +1

Query: 175 EYTREPCPWRILDD 216
           E +REPCP RILDD
Sbjct: 5   ESSREPCPDRILDD 18


>At5g11690.1 68418.m01366 mitochondrial import inner membrane
           translocase subunit Tim17, putative similar to SP|Q9SP35
           Mitochondrial import inner membrane translocase subunit
           TIM17 {Arabidopsis thaliana}; contains Pfam profile
           PF02466: Mitochondrial import inner membrane translocase
           subunit Tim17
          Length = 133

 Score = 87.4 bits (207), Expect = 7e-18
 Identities = 39/82 (47%), Positives = 58/82 (70%)
 Frame = +3

Query: 255 LFHSIKGFRNAPLGFSRKMLGSLAAVKERSPIVGGNFAVWGGMFSTIDCSLVYMRQKEDP 434
           ++H ++G  N+P+G   + +G   A    +P +GG FAV+GG+ ST D +LV +R+KEDP
Sbjct: 32  VYHFVRGAYNSPIG--ARYVGGTQAASMNAPRLGGTFAVFGGLLSTFDYALVRIRKKEDP 89

Query: 435 WNSIMSGALTGGILAARNGVPA 500
           WNSI++GA TGG+L+ R GV A
Sbjct: 90  WNSIVAGAATGGVLSIRKGVVA 111


>At3g10110.1 68416.m01211 mitochondrial import inner membrane
           translocase subunit Tim17/Tim22/Tim23 family protein
           weak similarity to TIM22 preprotein translocase [Rattus
           norvegicus] GI:6760457; contains Pfam profile PF02466:
           Mitochondrial import inner membrane translocase subunit
           Tim17
          Length = 173

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 19/46 (41%), Positives = 28/46 (60%)
 Frame = +3

Query: 363 FAVWGGMFSTIDCSLVYMRQKEDPWNSIMSGALTGGILAARNGVPA 500
           FAV G +FS  +C +   R K D  N+ ++G +TGG ++AR G  A
Sbjct: 105 FAVMGLVFSAAECIVEKARAKHDTVNTAIAGCVTGGSMSARGGPKA 150


>At1g18320.1 68414.m02289 mitochondrial import inner membrane
           translocase subunit Tim17/Tim22/Tim23 family protein
           contains Pfam domain PF02466: Mitochondrial import inner
           membrane translocase subunit Tim17
          Length = 129

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 19/46 (41%), Positives = 28/46 (60%)
 Frame = +3

Query: 363 FAVWGGMFSTIDCSLVYMRQKEDPWNSIMSGALTGGILAARNGVPA 500
           FAV G +FS  +C +   R K D  N+ ++G +TGG ++AR G  A
Sbjct: 61  FAVMGLVFSAAECIVEKARAKHDTVNTAIAGCVTGGSMSARGGPKA 106


>At1g17530.1 68414.m02155 mitochondrial import inner membrane
           translocase subunit Tim17/Tim22/Tim23 family protein
           contains Pfam PF02466: Mitochondrial import inner
           membrane translocase subunit Tim17
          Length = 187

 Score = 37.1 bits (82), Expect = 0.009
 Identities = 22/84 (26%), Positives = 39/84 (46%)
 Frame = +3

Query: 255 LFHSIKGFRNAPLGFSRKMLGSLAAVKERSPIVGGNFAVWGGMFSTIDCSLVYMRQKEDP 434
           +F  IK F N       K+   L +  +     G    + G +++ I+  +V +  K+D 
Sbjct: 79  IFSGIKSFENGDTT-KLKINRILNSSGQAGRTWGNRVGIVGLIYAGIESGVVAVTDKDDV 137

Query: 435 WNSIMSGALTGGILAARNGVPAMA 506
           W S+++G  TG +  A  GV + A
Sbjct: 138 WTSVVAGLGTGAVFRAARGVRSAA 161


>At5g51150.1 68418.m06342 expressed protein similar to unknown
           protein (gb|AAD46013.1)
          Length = 531

 Score = 33.9 bits (74), Expect = 0.086
 Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
 Frame = +3

Query: 330 VKERSPIVGGNFAVWGGMFSTIDCSLVYMRQKEDPWNSIMSGALTG-GILA 479
           V+E +  +G  F  + G +  + C L   R+KE P NS+++G++ G  ILA
Sbjct: 124 VREEACRIGLLFGGFTGSYHALRCCLRKWRKKETPLNSVLAGSVAGLSILA 174


>At1g12250.1 68414.m01417 thylakoid lumenal protein-related weak
           similarity to SP|O22160 Thylakoid lumenal 15 kDa
           protein, chloroplast precursor (p15) {Arabidopsis
           thaliana}; contains Pfam profile PF00805: Pentapeptide
           repeats (8 copies)
          Length = 280

 Score = 32.3 bits (70), Expect = 0.26
 Identities = 12/34 (35%), Positives = 22/34 (64%)
 Frame = +3

Query: 423 KEDPWNSIMSGALTGGILAARNGVPAMAGVHLLE 524
           + + W  I+S A+   ++A+ +GVPAMA ++  E
Sbjct: 63  ESNTWKRILSAAMAAAVIASSSGVPAMAELNRFE 96


>At3g62880.1 68416.m07064 mitochondrial import inner membrane
           translocase subunit Tim17/Tim22/Tim23 family protein
           contains PFam PF02466: Mitochondrial import inner
           membrane translocase subunit Tim17
          Length = 136

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
 Frame = +3

Query: 378 GMFSTIDCSLVYMRQKEDPWNSIMSGALTGGILA--ARNGVPAMAGVHLLEEFS*L**KA 551
           G+F+   C L   R K D  N+++ GA+ G  +A   RN    +    L+  FS      
Sbjct: 68  GVFTMTHCGLQRYRGKNDWVNALVGGAVAGAAVAISTRNWTQVVGMAGLVSAFS-----V 122

Query: 552 LVSCSQD*RLNSSN 593
           L +C++    N++N
Sbjct: 123 LANCTRTENPNNTN 136


>At5g16080.1 68418.m01879 expressed protein similar to PrMC3 [Pinus
           radiata] GI:5487873
          Length = 344

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -1

Query: 490 PFLAARIPPVRAPLIMEFHGSSFCL 416
           P  AA  P V  PL++ FHG  FC+
Sbjct: 81  PDAAAASPSVTLPLLVYFHGGGFCV 105


>At5g13480.1 68418.m01554 WD-40 repeat family protein similar to
           WD-repeat protein WDC146 (SP:Q9C0J8|) {Homo sapiens};
           contains 3 weak Pfam PF00400: WD domain, G-beta repeats;
          Length = 711

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = -2

Query: 561 MIPMPSIRAKRIPPISALLPLPVHHFLQP-GYPP*G 457
           M+PMP++   ++PP S+ +PL  HH  +P   PP G
Sbjct: 584 MLPMPNMPHHQLPP-SSHMPLHPHHLPRPMQMPPHG 618


>At5g62940.1 68418.m07897 Dof-type zinc finger domain-containing
           protein Dof zinc finger protein, Oryza sativa,
           EMBL:AB028129
          Length = 372

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
 Frame = +3

Query: 234 NGSDRWWLFHSIKGFRNAPLGFSR--KMLGSLAAVKERSPIVGGNFAVWGGMFSTIDCSL 407
           N SD   L HS + ++++PLGFS    M+GS +  +  +  VG   + +GG+ S     +
Sbjct: 150 NTSDLMALAHSHQNYQHSPLGFSHFGGMMGSYSTPEHGN--VGFLESKYGGLLSQSPRPI 207

Query: 408 VYMRQKED 431
            ++  K D
Sbjct: 208 DFLDSKFD 215


>At5g55510.1 68418.m06914 mitochondrial import inner membrane
           translocase subunit Tim17/Tim22/Tim23 family protein
           weak similarity to SP|Q99595 Mitochondrial import inner
           membrane translocase subunit TIM17 A {Homo sapiens};
           contains Pfam profile PF02466: Mitochondrial import
           inner membrane translocase subunit Tim17
          Length = 186

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = +3

Query: 363 FAVWGGMFSTIDCSLVYMRQKEDPWNSIMSGALTGGILAARNGVPAM 503
           FAV  G+ S + C L  +R K+D  N  ++G  TG  L+      AM
Sbjct: 63  FAVLSGVHSLVVCLLKQIRGKDDAINVGVAGCCTGLALSFPGAPQAM 109


>At4g26670.1 68417.m03842 mitochondrial import inner membrane
           translocase subunit Tim17/Tim22/Tim23 family protein
           weak similarity to SP|Q9Z0V8 Mitochondrial import inner
           membrane translocase subunit TIM17 A {Mus musculus};
           contains Pfam profile PF02466: Mitochondrial import
           inner membrane translocase subunit Tim17
          Length = 210

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +3

Query: 363 FAVWGGMFSTIDCSLVYMRQKEDPWNSIMSGALTG 467
           FAV  G+ S + C L  +R K+D  N  ++G  TG
Sbjct: 91  FAVLSGVHSLVVCLLKQIRGKDDAINVGVAGCCTG 125


>At3g17850.1 68416.m02275 protein kinase, putative similar to IRE
           (incomplete root hair elongation) [Arabidopsis thaliana]
           gi|6729346|dbj|BAA89783; contains protein kinase domain
           Pfam:PF00069
          Length = 1296

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = -1

Query: 460 RAPLIMEFHGSSFCLMYTSEQSMVENIPPQTAKLPPTIGERSFTAAKLPS 311
           R   +++FH  S+       Q     +     K+PP+   RS++AAK+PS
Sbjct: 421 RCTRLLQFHKESWGEEEQVVQLRQSRVLHSIEKIPPSGAGRSYSAAKVPS 470



 Score = 28.3 bits (60), Expect = 4.3
 Identities = 15/52 (28%), Positives = 26/52 (50%)
 Frame = -1

Query: 529 NSSNKCTPAIAGTPFLAARIPPVRAPLIMEFHGSSFCLMYTSEQSMVENIPP 374
           +S  K  P+ AG  + AA++P  +     E HG  +      E ++V ++PP
Sbjct: 449 HSIEKIPPSGAGRSYSAAKVPSTKKAYSQEQHGLDW-----KEDAVVRSVPP 495


>At3g12070.2 68416.m01503 geranylgeranyl transferase type II beta
           subunit, putative / RAB geranylgeranyltransferase beta
           subunit, putative similar to geranylgeranyl transferase
           type II beta subunit SP:P53611 [GI:1552549] [Homo
           sapiens]
          Length = 317

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +2

Query: 320 FGCSKGALSNSRG*FCCLG 376
           FGCS GA S++   FCC+G
Sbjct: 170 FGCSPGAESHAGQIFCCVG 188


>At3g12070.1 68416.m01502 geranylgeranyl transferase type II beta
           subunit, putative / RAB geranylgeranyltransferase beta
           subunit, putative similar to geranylgeranyl transferase
           type II beta subunit SP:P53611 [GI:1552549] [Homo
           sapiens]
          Length = 317

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +2

Query: 320 FGCSKGALSNSRG*FCCLG 376
           FGCS GA S++   FCC+G
Sbjct: 170 FGCSPGAESHAGQIFCCVG 188


>At3g42880.1 68416.m04495 leucine-rich repeat transmembrane protein
           kinase, putative receptor-like protein kinase PRK1,
           Lycopersicon esculentum, PIR:T07865
          Length = 633

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 21/53 (39%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
 Frame = -2

Query: 456 LHS*WNSMDLPFASCTQVSSLW*RTYHPKQQNYPRLLESAPLLQPN--CQAFF 304
           LH  + S DLP  +    + L   TY P   +Y  L    PLLQPN   QA F
Sbjct: 473 LHEEFASYDLPHGNLKSSNVLLSETYEPLISDYAFL----PLLQPNNASQALF 521


>At1g64790.1 68414.m07346 translational activator family protein
            similar to HsGCN1 [Homo sapiens] GI:2282576
          Length = 2440

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
 Frame = -1

Query: 409  TSEQSMVENIPPQTAKLPPTIGER---SFTAAKLPS-IFLLKPSGAFLKPFI 266
            TSEQ++ E + P T  L   IG+R      +A L + I L++  G  LKPF+
Sbjct: 2072 TSEQALKEFVIPITGPLIRIIGDRFPWQVKSAILATLIILIQRGGMALKPFL 2123


>At3g60140.1 68416.m06715 glycosyl hydrolase family 1 protein
           contains Pfam PF00232 : Glycosyl hydrolase family 1
           domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
           similar to Cyanogenic Beta-Glucosidase
           (GI:1311386)(pdb:1CBG) [Trifolium Repens]; identical
           beta-glucosidase GI:10834547
          Length = 577

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 20/63 (31%), Positives = 24/63 (38%), Gaps = 4/63 (6%)
 Frame = +2

Query: 326 CSKGALSNSRG*FCCLGWYVLYHRLLTCVHEAKGRSMEFHYEW--SP--HGGYPGCKKWC 493
           C K +     G      W+  YH   T   EA  R++ F   W   P  HG YP   K  
Sbjct: 251 CEKTSHDGQIGIVLSPRWFEPYHSDSTDDKEAAERALAFEIGWHLDPVIHGDYPEIVKKY 310

Query: 494 TGN 502
            GN
Sbjct: 311 AGN 313


>At5g12210.2 68418.m01433 geranylgeranyl transferase type II beta
           subunit, putative / RAB geranylgeranyltransferase beta
           subunit, putative similar to rab geranylgeranyl
           transferase GB:CAA69383 GI:1552549 from [Homo sapiens]
          Length = 320

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +2

Query: 320 FGCSKGALSNSRG*FCCLG 376
           FGC+ GA S++   FCC+G
Sbjct: 174 FGCTPGAESHAGQIFCCVG 192


>At5g12210.1 68418.m01432 geranylgeranyl transferase type II beta
           subunit, putative / RAB geranylgeranyltransferase beta
           subunit, putative similar to rab geranylgeranyl
           transferase GB:CAA69383 GI:1552549 from [Homo sapiens]
          Length = 321

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +2

Query: 320 FGCSKGALSNSRG*FCCLG 376
           FGC+ GA S++   FCC+G
Sbjct: 175 FGCTPGAESHAGQIFCCVG 193


>At4g21300.1 68417.m03077 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 857

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = +3

Query: 357 GNFAVWGGMFSTIDCSLVYMRQKEDPWNSIMSGALTGGIL 476
           G+F+  G MF  +D     +R    PWNSI+S  +  G+L
Sbjct: 84  GSFSDCGKMFYRLDLRRSSIR----PWNSIISSFVRNGLL 119


>At1g65590.1 68414.m07441 glycosyl hydrolase family 20 protein
           contains Pfam PF00728: Glycosyl hydrolase family 20,
           catalytic domain; contains Pfam PF02838: Glycosyl
           hydrolase family 20, domain 2; similar to
           Beta-hexosaminidase beta chain precursor (EC 3.2.1.52)
           (N-acetyl-beta- glucosaminidase)
           (Beta-N-acetylhexosaminidase) (Hexosaminidase B)
           (Swiss-Prot:P07686) [Homo sapiens]
          Length = 535

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 11/52 (21%), Positives = 27/52 (51%)
 Frame = +3

Query: 222 RCVYNGSDRWWLFHSIKGFRNAPLGFSRKMLGSLAAVKERSPIVGGNFAVWG 377
           RC+ +  + W+L H    ++     ++ +   ++   K++S ++GG   +WG
Sbjct: 412 RCIVSNQEFWYLDHIDAPWQGF---YANEPFQNITDKKQQSLVLGGEVCMWG 460


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,130,275
Number of Sequences: 28952
Number of extensions: 318907
Number of successful extensions: 696
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 658
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 693
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1236350304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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