Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120850.seq
         (638 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC36B7.02 |||Svf1 family protein Svf2|Schizosaccharomyces pomb...    27   3.0  
SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr 1|...    26   5.3  
SPAPB17E12.04c |csn2||COP9/signalosome complex subunit Csn2 |Sch...    25   7.0  
SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1 |Schizosacch...    25   7.0  
SPAC1952.03 |||cysteine protease, OTU family|Schizosaccharomyces...    25   9.2  
SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|c...    25   9.2  
SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    25   9.2  

>SPBC36B7.02 |||Svf1 family protein Svf2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 353

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 2/89 (2%)
 Frame = +2

Query: 377 SCCYSSRLRVTSMQSNGCYTI**MLSRRTFEKLSQDWRRCVR-GSFLXAWLEMGRARVM- 550
           S  YSSR     + S  C  +   LSR       + +  C   GSF    +  G   ++ 
Sbjct: 2   SSSYSSRAEKYDLIS--CKDLTWDLSRSHLTTQYKSFYMCFDDGSFGYLQIAYGNLGLLV 59

Query: 551 KIVPIGWSYQGQWEKTQKDYHEIISGNLW 637
           K+ P+GW+Y     KT+K+   I++ + +
Sbjct: 60  KVTPLGWTYYP--AKTEKNVEPIVNSSTY 86


>SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 785

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +3

Query: 423 TDAILFDECYPDALLKNCHKIGEGVYGEV 509
           T  + F+E Y +A +   HK GE +Y  V
Sbjct: 41  TSQLSFEELYRNAYILVLHKYGEKLYNHV 69


>SPAPB17E12.04c |csn2||COP9/signalosome complex subunit Csn2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 437

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
 Frame = -1

Query: 515 KENFPVHTFANLVTVFQKCV----WIAFIK*YSIRLIAST*HVISSCSNT 378
           K NF +  + +++  +Q+ +    W++  K YS + I +     SSC NT
Sbjct: 77  KINFQLKKYDDMLQSYQRLLGYTNWLSITKNYSEKSIYNIVEYASSCENT 126


>SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 593

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +3

Query: 435 LFDECYPDALLKNCHKIGEGVYGEVF 512
           ++   YP    +   +IGEG YG+V+
Sbjct: 267 IYTYTYPKPAYEKIDQIGEGTYGKVY 292


>SPAC1952.03 |||cysteine protease, OTU family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 324

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +3

Query: 396 DYVLRRCNQTDAILFDE 446
           DYVL+ C Q +  L DE
Sbjct: 224 DYVLKHCEQFEGFLLDE 240


>SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 708

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -1

Query: 512 ENFPVHTFANLVTVFQKCVWIAF 444
           ENF   TF  L +  + CVW+ F
Sbjct: 639 ENFNATTFGLLSSFTKHCVWLKF 661


>SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 661

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 13/22 (59%), Positives = 14/22 (63%)
 Frame = +1

Query: 571 VIPRSMGEDPKGLSRDYLGKFV 636
           VI RSM +D   LS DYLG  V
Sbjct: 187 VIARSMLDDVAELSSDYLGNTV 208


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,663,374
Number of Sequences: 5004
Number of extensions: 54699
Number of successful extensions: 158
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)