Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120850.seq
         (638 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0436 + 20755816-20756025,20756124-20756240,20756942-207571...    29   4.1  
06_01_0764 - 5716208-5717727,5718452-5718505,5718506-5718683           29   4.1  
09_06_0232 - 21737299-21739233                                         28   5.4  

>06_03_0436 + 20755816-20756025,20756124-20756240,20756942-20757137,
            20757393-20757544,20757653-20757736,20757848-20757925,
            20757958-20758116,20758219-20758251,20759119-20759826,
            20759917-20759998,20760093-20760449,20760586-20760692,
            20760796-20761001,20761480-20761623,20761715-20761800,
            20762120-20762283,20762559-20763119
          Length = 1147

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 5/48 (10%)
 Frame = +3

Query: 300  IVGLSKLSLDD-----VEPEITVLGIHDTSNRVATARDYVLRRCNQTD 428
            I+GLSKLS+ +     V+PE+   G  D+  R++   D  L    +TD
Sbjct: 1064 IMGLSKLSMSEMGHNSVDPELPCFGYDDSEGRLSDISDSGLSMGAETD 1111


>06_01_0764 - 5716208-5717727,5718452-5718505,5718506-5718683
          Length = 583

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -2

Query: 538 SAHLEPRXKKTSPYTPSPIL*QFFKSASG*H 446
           S H  PR  K+SP++PSP L Q  +     H
Sbjct: 116 SRHESPRYYKSSPFSPSPYLLQKLRDYEARH 146


>09_06_0232 - 21737299-21739233
          Length = 644

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -1

Query: 308 PDNRIITIVAQKSCVLQGRCMHLALDTFNGTK 213
           P+  II+  A  SC +QG   H ALD +N  K
Sbjct: 304 PEKSIISWNAMISCYVQGGRFHEALDLYNRMK 335


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,244,385
Number of Sequences: 37544
Number of extensions: 321968
Number of successful extensions: 786
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 771
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 786
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)