Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120850.seq
         (638 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52959| Best HMM Match : ProQ (HMM E-Value=6.7)                      30   1.4  
SB_19785| Best HMM Match : SRR1 (HMM E-Value=8.8e-19)                  29   2.4  
SB_973| Best HMM Match : No HMM Matches (HMM E-Value=.)                29   3.2  
SB_51685| Best HMM Match : Pkinase (HMM E-Value=0)                     28   5.6  
SB_39200| Best HMM Match : SHD1 (HMM E-Value=4)                        28   7.4  
SB_25465| Best HMM Match : SHD1 (HMM E-Value=4)                        28   7.4  
SB_8207| Best HMM Match : SHD1 (HMM E-Value=4)                         28   7.4  
SB_7712| Best HMM Match : RVT_1 (HMM E-Value=9.7e-28)                  28   7.4  
SB_47188| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.4  
SB_46747| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.4  
SB_42622| Best HMM Match : Gal-bind_lectin (HMM E-Value=9.1)           28   7.4  
SB_32319| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.4  
SB_29342| Best HMM Match : SHD1 (HMM E-Value=2.8)                      28   7.4  
SB_53159| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  
SB_26502| Best HMM Match : Band_41 (HMM E-Value=1.4e-16)               27   9.7  
SB_21006| Best HMM Match : GASA (HMM E-Value=0.88)                     27   9.7  

>SB_52959| Best HMM Match : ProQ (HMM E-Value=6.7)
          Length = 228

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = -2

Query: 136 HNTHNNSCFFNVYY*S*NTSEYHNTVTKL-KIK*KLFSRTKT 14
           H THN    +  YY + + + YH+ VTK+ K+  ++F R +T
Sbjct: 15  HLTHNGKSQYARYYVNHDETFYHDNVTKVAKVSRQIFYRPRT 56


>SB_19785| Best HMM Match : SRR1 (HMM E-Value=8.8e-19)
          Length = 735

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +3

Query: 417 NQTDAILFDECYPDALLKNCHKIGEGVYGEVFFXRGSRWAEL 542
           N   A LFD+  P+ +  +  +IG G +G V++ R  R  E+
Sbjct: 446 NAEYAGLFDDHDPEKIYADLREIGHGSFGAVYYARNVRTNEV 487


>SB_973| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1200

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = +3

Query: 360 IHDTSNRVATARDYVLRRCNQTDAILFDECYPDALLKNCHKIGEGVYGEVFFXRGSR 530
           IHD   R    RD V+R C   D ++ D    D  L++C      V+  V   R +R
Sbjct: 722 IHDRVVRDCVMRDRVIRDCVMRDRVVRDSVMCDRDLRDCATRNRVVHDYVMRDRVAR 778


>SB_51685| Best HMM Match : Pkinase (HMM E-Value=0)
          Length = 380

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 435 LFDECYPDALLKNCHKIGEGVYGEVF 512
           +F  C P A  +  ++IGEG YG V+
Sbjct: 26  MFGSCRPVAEFEKLNRIGEGTYGIVY 51


>SB_39200| Best HMM Match : SHD1 (HMM E-Value=4)
          Length = 211

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = +3

Query: 270 GFLSDDCDDTIVGLSKLSLDDVEPEITVLGIHDTSNR 380
           G++  D  +T + L K+  +D+E ++ +  IH+ S R
Sbjct: 104 GYIWLDAPNTSINLIKMRFEDIERQVWLSEIHNDSRR 140


>SB_25465| Best HMM Match : SHD1 (HMM E-Value=4)
          Length = 147

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = +3

Query: 270 GFLSDDCDDTIVGLSKLSLDDVEPEITVLGIHDTSNR 380
           G++  D  +T + L K+  +D+E ++ +  IH+ S R
Sbjct: 40  GYIWLDAPNTSINLIKMRFEDIERQVWLSEIHNDSRR 76


>SB_8207| Best HMM Match : SHD1 (HMM E-Value=4)
          Length = 208

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = +3

Query: 270 GFLSDDCDDTIVGLSKLSLDDVEPEITVLGIHDTSNR 380
           G++  D  +T + L K+  +D+E ++ +  IH+ S R
Sbjct: 25  GYIWLDAPNTSINLIKMRFEDIERQVWLSEIHNDSRR 61


>SB_7712| Best HMM Match : RVT_1 (HMM E-Value=9.7e-28)
          Length = 478

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = +3

Query: 270 GFLSDDCDDTIVGLSKLSLDDVEPEITVLGIHDTSNR 380
           G++  D  +T + L K+  +D+E ++ +  IH+ S R
Sbjct: 104 GYIWLDAPNTSINLIKMRFEDIERQVWLSEIHNDSRR 140


>SB_47188| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 270

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = +3

Query: 270 GFLSDDCDDTIVGLSKLSLDDVEPEITVLGIHDTSNR 380
           G++  D  +T + L K+  +D+E ++ +  IH+ S R
Sbjct: 183 GYIWLDAPNTSINLIKMRFEDIERQVWLSEIHNDSRR 219


>SB_46747| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 576

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = +3

Query: 270 GFLSDDCDDTIVGLSKLSLDDVEPEITVLGIHDTSNR 380
           G++  D  +T + L K+  +D+E ++ +  IH+ S R
Sbjct: 393 GYIWLDAPNTSINLIKMRFEDIERQVWLSEIHNDSRR 429


>SB_42622| Best HMM Match : Gal-bind_lectin (HMM E-Value=9.1)
          Length = 112

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = +3

Query: 270 GFLSDDCDDTIVGLSKLSLDDVEPEITVLGIHDTSNR 380
           G++  D  +T + L K+  +D+E ++ +  IH+ S R
Sbjct: 25  GYIWLDAPNTSINLIKMRFEDIERQVWLSEIHNDSRR 61


>SB_32319| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 551

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = +3

Query: 270 GFLSDDCDDTIVGLSKLSLDDVEPEITVLGIHDTSNR 380
           G++  D  +T + L K+  +D+E ++ +  IH+ S R
Sbjct: 368 GYIWLDAPNTSINLIKMRFEDIERQVWLSEIHNDSRR 404


>SB_29342| Best HMM Match : SHD1 (HMM E-Value=2.8)
          Length = 310

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = +3

Query: 270 GFLSDDCDDTIVGLSKLSLDDVEPEITVLGIHDTSNR 380
           G++  D  +T + L K+  +D+E ++ +  IH+ S R
Sbjct: 183 GYIWLDAPNTSINLIKMRFEDIERQVWLSEIHNDSRR 219


>SB_53159| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1540

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
 Frame = +3

Query: 309 LSKLSLDDVEPEITVLGIHDTS--NRVATARD 398
           L+  ++D+V P I +   HDT+  N ++TA D
Sbjct: 409 LNSAAIDEVRPTIVLPSFHDTTFLNHISTASD 440


>SB_26502| Best HMM Match : Band_41 (HMM E-Value=1.4e-16)
          Length = 573

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -1

Query: 254 RCMHLALDTFNGTKNRQKKPIIPLRIMAVTQISFSLKV 141
           RC HL+ D FNG K   K   +  R + +   S S+++
Sbjct: 58  RCDHLSFDEFNGPKKPSKHRNLLSRTLDLLSRSRSIRI 95


>SB_21006| Best HMM Match : GASA (HMM E-Value=0.88)
          Length = 288

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 22/56 (39%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
 Frame = +1

Query: 472 TVTRLAKVCTGKFSLXVARDGQSSSNENSSNWLVIPRSMG-EDPKGLSRDYLGKFV 636
           T TRL +VCT K  +  A   Q   NEN S     P+S    D +G SR  L   V
Sbjct: 81  TETRLRRVCTTKECVRTASGLQ--ENENLSTSHTTPKSTTLYDKEGQSRKVLNSVV 134


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,820,328
Number of Sequences: 59808
Number of extensions: 415908
Number of successful extensions: 1065
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 940
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1065
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1608851125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)