Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120850.seq
         (638 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L14745-8|AAA27923.1|  244|Caenorhabditis elegans Tetraspanin fam...    29   2.8  
U13071-1|AAL65794.1|  462|Caenorhabditis elegans Hypothetical pr...    28   4.9  
Z48583-1|CAA88470.1|  389|Caenorhabditis elegans Hypothetical pr...    28   6.5  
Z22178-3|CAA80159.3| 1027|Caenorhabditis elegans Hypothetical pr...    28   6.5  
U80452-2|AAK68180.1|  729|Caenorhabditis elegans Hypothetical pr...    28   6.5  
AF192400-1|AAF24233.1| 1027|Caenorhabditis elegans emb-30 protei...    28   6.5  
U41549-1|AAA83281.1|  299|Caenorhabditis elegans Hypothetical pr...    27   8.6  

>L14745-8|AAA27923.1|  244|Caenorhabditis elegans Tetraspanin family
           protein 1 protein.
          Length = 244

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = +1

Query: 325 SMMWNRRSPF*V-YMILRIVLLQLEITCYVDAIKR 426
           S +W +R  F + Y++L IVL+ LEI C V  + R
Sbjct: 91  SSVWPKRKGFMITYLVLIIVLVSLEIGCGVAVLVR 125


>U13071-1|AAL65794.1|  462|Caenorhabditis elegans Hypothetical
           protein T22F7.5 protein.
          Length = 462

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 9/10 (90%), Positives = 10/10 (100%)
 Frame = +2

Query: 227 KCPKPSACIY 256
           KCPKPSAC+Y
Sbjct: 319 KCPKPSACVY 328


>Z48583-1|CAA88470.1|  389|Caenorhabditis elegans Hypothetical
           protein F54B3.2 protein.
          Length = 389

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +3

Query: 288 CDDTIVGLSKLSLDDVEPEITVLGIHDTSN-RVATARDYV 404
           C D  +GLS LS     PEI VL  H++++ R+ +A D V
Sbjct: 49  CHDVPLGLSNLSTITNIPEIVVLREHNSNDIRMTSALDDV 88


>Z22178-3|CAA80159.3| 1027|Caenorhabditis elegans Hypothetical protein
            F54C8.3 protein.
          Length = 1027

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 16/61 (26%), Positives = 31/61 (50%)
 Frame = +3

Query: 231  VQSQVHASTLQYTGFLSDDCDDTIVGLSKLSLDDVEPEITVLGIHDTSNRVATARDYVLR 410
            +++ +   T+Q   +L DD        SK+++ D++PE+  +  ++      T RDY  R
Sbjct: 928  IETLIIHPTIQLAAYLHDDG-------SKITIGDMKPEVPPIADYEEKTVRKTFRDYQRR 980

Query: 411  R 413
            R
Sbjct: 981  R 981


>U80452-2|AAK68180.1|  729|Caenorhabditis elegans Hypothetical
           protein C16C8.2 protein.
          Length = 729

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -1

Query: 251 CMHLALDTFNGTKNRQKKPIIPLRIMAVTQI 159
           C HL   +F+GT N  KKP+I     A+ ++
Sbjct: 199 CYHLRYRSFDGTCNNLKKPMIGSAFTALMRL 229


>AF192400-1|AAF24233.1| 1027|Caenorhabditis elegans emb-30 protein
            protein.
          Length = 1027

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 16/61 (26%), Positives = 31/61 (50%)
 Frame = +3

Query: 231  VQSQVHASTLQYTGFLSDDCDDTIVGLSKLSLDDVEPEITVLGIHDTSNRVATARDYVLR 410
            +++ +   T+Q   +L DD        SK+++ D++PE+  +  ++      T RDY  R
Sbjct: 928  IETLIIHPTIQLAAYLHDDG-------SKITIGDMKPEVPPIADYEEKTVRKTFRDYQRR 980

Query: 411  R 413
            R
Sbjct: 981  R 981


>U41549-1|AAA83281.1|  299|Caenorhabditis elegans Hypothetical
           protein F22F1.2 protein.
          Length = 299

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +3

Query: 480 KIGEGVYGEVFFXRGSR 530
           K+GEG YG+V+F R  R
Sbjct: 16  KLGEGSYGDVYFCRDER 32


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,723,764
Number of Sequences: 27780
Number of extensions: 306930
Number of successful extensions: 877
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 845
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 877
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)