Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120850.seq
         (638 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g09450.1 68414.m01057 haspin-related similar to haspin (GI:92...    31   0.65 
At3g28040.1 68416.m03500 leucine-rich repeat transmembrane prote...    28   6.0  
At2g29970.1 68415.m03645 heat shock protein-related contains sim...    28   6.0  
At5g57540.1 68418.m07189 xyloglucan:xyloglucosyl transferase, pu...    27   7.9  
At3g02780.1 68416.m00270 isopentenyl-diphosphate delta-isomerase...    27   7.9  

>At1g09450.1 68414.m01057 haspin-related similar to haspin
           (GI:9229937) {Mus musculus} and haploid germ
           cell-specific nuclear protein kinase (GI:13561418) {Mus
           musculus}
          Length = 599

 Score = 31.1 bits (67), Expect = 0.65
 Identities = 34/125 (27%), Positives = 57/125 (45%), Gaps = 15/125 (12%)
 Frame = +3

Query: 276 LSDDCDDTI----VGLSKLSLDDVEPEITVLGIHDTSNRVATARDY------VLRRCNQT 425
           L   CD+ +    V + K+ ++ ++ E  +  +  TS+ + T +D+      +L  C Q 
Sbjct: 213 LIPSCDENLAAEDVPVRKIKMESIDLEDELKRLSLTSDLIPTHQDFDQPILDLLSACGQM 272

Query: 426 DAILFDE-----CYPDALLKNCHKIGEGVYGEVFFXRGSRWAELE**K*FQLAGHTKVNG 590
               F E     C P++++K    IGEG YGE  F  GS   ++       + G  +VNG
Sbjct: 273 RPSNFIEAFSKFCEPESIVK----IGEGTYGEA-FRAGSSVCKI-----VPIDGDFRVNG 322

Query: 591 RRPKR 605
              KR
Sbjct: 323 EVQKR 327


>At3g28040.1 68416.m03500 leucine-rich repeat transmembrane protein
           kinase, putative contains Pfam profiles: PF00560 leucine
           rich repeat, PF00069 eukaryotic protein kinase domain
          Length = 1016

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +3

Query: 453 PDALLKNCHKIGEGVYGEVF 512
           P++LL    +IGEGV+G V+
Sbjct: 722 PESLLNKASRIGEGVFGTVY 741


>At2g29970.1 68415.m03645 heat shock protein-related contains
           similarity to 101 kDa heat shock protein; HSP101
           [Triticum aestivum] gi|11561808|gb|AAC83689
          Length = 1002

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = -1

Query: 278 QKSCVLQGRCMHLALDTFNGTKNRQKKPIIPLRIMAVTQISFSL 147
           +K+ +L G C   AL TF  + NR K   +PL I  ++ +S  +
Sbjct: 237 KKNPLLVGVCGVEALKTFTDSINRGKFGFLPLEISGLSVVSIKI 280


>At5g57540.1 68418.m07189 xyloglucan:xyloglucosyl transferase,
           putative / xyloglucan endotransglycosylase, putative /
           endo-xyloglucan transferase, putative similar to
           xyloglucan endotransglycosylase (XTR9) GI:4218963 from
           [Arabidopsis thaliana]
          Length = 284

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -2

Query: 292 SQSSLKNPVYCRVDACTWLWTLLTEQK 212
           S++SL N V C  ++ +W+WT L   +
Sbjct: 224 SRTSLLNWVTCNANSNSWMWTTLNSNQ 250


>At3g02780.1 68416.m00270 isopentenyl-diphosphate delta-isomerase II
           / isopentenyl diphosphate:dimethylallyl diphosphate
           isomerase II (IPP2) identical to isopentenyl
           diphosphate:dimethylallyl diphosphate isomerase (IPP2)
           GB:U49259 [Arabidopsis thaliana]
          Length = 284

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
 Frame = -3

Query: 534 PISSHAQRKLP--RTHLRQSCDSFSKVRLDSIHQIV*HPFDCIDVTRNLEL*QHDSKYHV 361
           P+SS + RKLP  R     +        +D++ + +    +CI V     +  HDSKY+ 
Sbjct: 32  PLSSISPRKLPNFRAFSGTAMTDTKDAGMDAVQRRLMFEDECILVDETDRVVGHDSKYNC 91

Query: 360 YL 355
           +L
Sbjct: 92  HL 93


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,613,223
Number of Sequences: 28952
Number of extensions: 276455
Number of successful extensions: 752
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 733
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 751
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1314848736
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)