Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120849.seq
         (639 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    34   0.015
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam...    28   0.99 
SPCC4B3.06c |||NADPH-dependent FMN reductase |Schizosaccharomyce...    27   3.0  
SPBC106.19 ||SPBC582.01|sequence orphan|Schizosaccharomyces pomb...    26   4.0  
SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1||...    26   4.0  
SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit Swi2|Schizo...    26   5.3  
SPCC132.04c |||NAD-dependent glutamate dehydrogenase |Schizosacc...    25   7.0  
SPAC212.04c |||S. pombe specific DUF999 family protein 1|Schizos...    25   7.0  
SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog...    25   7.0  
SPCC613.09 |sen54||tRNA-splicing endonuclease subunit Sen54 |Sch...    25   9.2  
SPAPB1A10.15 |||Arv1-like family protein|Schizosaccharomyces pom...    25   9.2  

>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3131

 Score = 34.3 bits (75), Expect = 0.015
 Identities = 20/60 (33%), Positives = 31/60 (51%)
 Frame = +3

Query: 135  GKLADDEYILIADRMYVDLIYSEFRAIILPQSAYIIKGDYQKAIVKAGKVSTFVMNSNIL 314
            GK A DEY+  A+   VD++Y   +  I+  S YI+K       +   +VS   +NS+ L
Sbjct: 2904 GKYAFDEYLYHAEIQNVDILYISTKHFIITGSNYIVKIAVPVKQISGLRVSEHDLNSSCL 2963


>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
           Mam3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 28.3 bits (60), Expect = 0.99
 Identities = 22/96 (22%), Positives = 37/96 (38%)
 Frame = +2

Query: 254 PESDSESGQSVDVCNELKYPWNLITANSFIVSTDESRQSQYIYRTFLLYNTVLTAILKQN 433
           P   S +   +     +K   + I   SF+ +T    Q + +     L  T+LT     +
Sbjct: 374 PSVSSPTSSILTNSGSIKSGDHQIVTTSFVQTTTHGSQVETLTYVTTLTETILTTTYDSH 433

Query: 434 NPFNVIAENTSISIIVRNLGNCPNNKIE*SAAISIT 541
                I  + S SI   N    P++ I+ S   S+T
Sbjct: 434 TFLTTITPSPSNSISYTNNTFIPSSSIKSSIVYSVT 469


>SPCC4B3.06c |||NADPH-dependent FMN reductase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 200

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = -1

Query: 609 NGKPFLVISRGGH 571
           NGKP L++S GGH
Sbjct: 117 NGKPLLIVSYGGH 129


>SPBC106.19 ||SPBC582.01|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 515

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = +2

Query: 245 RRLPESDSESGQSVDVCNELKYP-WNLITANSFIVSTDESRQSQYIYRTFLL 397
           RRL    SE+G+++++C  L    +  +  N   +S DE  + Q +Y   LL
Sbjct: 173 RRLLVYTSEAGENIEICFFLTNSLFKRLLNNREALSKDEKSELQNLYYDLLL 224


>SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 992

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 16/69 (23%), Positives = 30/69 (43%)
 Frame = -3

Query: 262 AFW*SPLIMYAL*GKIMALNSE*IKSTYMRSAIKMYSSSASLPMYLMTVSMMIFKTPMLC 83
           + W SP ++ A   K  AL S  IK    ++ +      +S+       + +   TP   
Sbjct: 730 SIWGSPSVINAWANKPAALKSPLIKKNIQQAELAQNKQQSSVTTASPRSNALNANTPKAA 789

Query: 82  SPASSTLLK 56
           +P+S+  +K
Sbjct: 790 APSSNVTMK 798


>SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit
           Swi2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 722

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 14/55 (25%), Positives = 27/55 (49%)
 Frame = +2

Query: 341 IVSTDESRQSQYIYRTFLLYNTVLTAILKQNNPFNVIAENTSISIIVRNLGNCPN 505
           +++ + S+    + +     N+VL+     +N  N+I  NT  + I+ N  N PN
Sbjct: 463 VLNENNSKNRTNVTKPNSYKNSVLSIGNNHSNHSNIIKPNTYKNTILSNENNTPN 517


>SPCC132.04c |||NAD-dependent glutamate dehydrogenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1106

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -2

Query: 281 FARFHYRFLVISFDNVRALRQNNGPKFGIN 192
           F  FH RF  ++   +R ++  N   FG+N
Sbjct: 597 FRGFHLRFRDVARGGIRLIKSANPEAFGLN 626


>SPAC212.04c |||S. pombe specific DUF999 family protein
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 288

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 14/55 (25%), Positives = 27/55 (49%)
 Frame = -3

Query: 598 LFGNLTRRAHDMVPGGMPARN*DRSTLLDLVVWTIAQIPDYN*NGSIFSNYIKWI 434
           LF   ++  +   P G  +   D+S  + L++W+I  I   +    I  +Y++WI
Sbjct: 82  LFTEFSKFHNSYYPNGRISTQ-DKSRWVLLIIWSIITILTIDKKFKIKESYLEWI 135


>SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 982

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +2

Query: 65  RRRGWRTQHGRFKDHHRYGHQVHWQTGRRRVHFD 166
           R+R    QH  F++H R G  +H  T  +++H +
Sbjct: 498 RQRLDELQHSIFEEHKRVGSDLHQDT-EKKLHLE 530


>SPCC613.09 |sen54||tRNA-splicing endonuclease subunit Sen54
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 384

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
 Frame = -1

Query: 591 VISRGGHMTWSPAGCPPVIEIAALYSILLFGQLPKFLTIIEME--VFSAITLN 439
           ++ RG    WS  G P  ++     SI L G L  +L    +    FS I  N
Sbjct: 127 LVERGSMECWSEEGLPMSLQAVYSASIPLCGSLENYLVYAHLRRCGFSVIRSN 179


>SPAPB1A10.15 |||Arv1-like family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 220

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -3

Query: 463 SIFSNYIKWIVLFENCGQNCIV 398
           SI +  ++W+VLF N    CI+
Sbjct: 184 SIAATVVEWVVLFSNVDALCIL 205


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,633,522
Number of Sequences: 5004
Number of extensions: 52981
Number of successful extensions: 143
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)