Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120849.seq
         (639 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0787 + 6578158-6579287,6579439-6580870,6581087-6581097,658...    28   7.2  
05_05_0089 - 22305727-22306115,22306206-22306311,22306386-223067...    27   9.5  

>11_01_0787 +
           6578158-6579287,6579439-6580870,6581087-6581097,
           6581525-6582125,6583981-6585054,6585745-6585873,
           6585925-6585963
          Length = 1471

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
 Frame = +2

Query: 284 VDVCNELKYPWNLITANS-FIVSTDESRQSQYIYRTFLLYNTVLTAILKQNNPFNVIAEN 460
           VD C  L  P  +++  S F+ S D     + + R ++    VL+   K+NN   V+AE 
Sbjct: 360 VDRCQGL--PLAIVSIGSLFLFSEDYPISRESLVRLWIAEGFVLS---KENNTPEVVAEG 414

Query: 461 TSISIIVRNL 490
             + +I RN+
Sbjct: 415 NLMELIYRNM 424


>05_05_0089 -
           22305727-22306115,22306206-22306311,22306386-22306730,
           22306847-22307257
          Length = 416

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +3

Query: 483 GIWAIVQTTRSSKVLRSQLRAGIPPGTMSCAR 578
           G+W +V    + +V+R+  R+  PP    C+R
Sbjct: 320 GLWDVVTNEMACEVVRACFRSNGPPSPPGCSR 351


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,734,298
Number of Sequences: 37544
Number of extensions: 338626
Number of successful extensions: 868
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 849
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 868
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)