Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120849.seq
         (639 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34084| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.8  
SB_33924| Best HMM Match : DUF310 (HMM E-Value=4.2)                    28   5.6  
SB_16030| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.4  
SB_19778| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  
SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0)               27   9.7  
SB_53938| Best HMM Match : Gln-synt_N (HMM E-Value=0.78)               27   9.7  

>SB_34084| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 261

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 14/30 (46%), Positives = 21/30 (70%)
 Frame = +3

Query: 66  VDEAGEHNMGVLKIIIDTVIKYIGKLADDE 155
           VD+ GEHNMGV K+  D +   + K+A+D+
Sbjct: 33  VDKVGEHNMGVDKVSEDDI--GVDKVAEDD 60


>SB_33924| Best HMM Match : DUF310 (HMM E-Value=4.2)
          Length = 326

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +2

Query: 254 PESDSESGQSVD-VCNELKYPWNLITANSFIVSTD 355
           P++ S   +S+    +E KYPWN++    F+ S D
Sbjct: 93  PDTISSYQRSIQRFLDEAKYPWNILKDKEFVESRD 127


>SB_16030| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 155

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
 Frame = -1

Query: 636 LGFLTPLCRNGKPFLVISRGGHMTWSPAGCPPVIEIAALYSILLFGQLP-KFLTIIEMEV 460
           + FL  L  N   F+V  R  H  +SP      I I     +LL    P  F++ ++ E 
Sbjct: 42  VSFLVDLAVNIMAFMVFKRNSHFPFSPY----FINITVCSFVLLLNCNPMSFISSLKEEK 97

Query: 459 FSAITLNGLFC 427
            +A++ +  FC
Sbjct: 98  ENALSCSQYFC 108


>SB_19778| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 767

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +1

Query: 484 EFGQLSKQQDRVKCCDLNYGRASRRGPC 567
           EF + ++Q  +    D NY RA +R PC
Sbjct: 629 EFVEKAEQAQKTMFLDFNYKRAMKRKPC 656


>SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0)
          Length = 1467

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = +3

Query: 156  YILIADRMYVDLIYSEFRAIILPQSAYIIKGDYQKAIVKAGKVST 290
            +IL   R+++DL  S  R  +LP+  Y +   YQ A   AG  +T
Sbjct: 1278 HILFCCRIFLDLPVSS-RFKLLPRVIYDLSSSYQIAFYAAGACAT 1321


>SB_53938| Best HMM Match : Gln-synt_N (HMM E-Value=0.78)
          Length = 140

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 15/60 (25%), Positives = 28/60 (46%)
 Frame = +2

Query: 446 VIAENTSISIIVRNLGNCPNNKIE*SAAISITGGHPAGDHVMCPPREITKKGFPLRQSGV 625
           +I  +  +S++VR++G  PN  +   A  +     P G+ +  PP  +   G  L   G+
Sbjct: 1   IIRSSKKLSVVVRSVGRIPNTFV---AEATYRWIDPRGNQIPAPP-NVDSSGRSLSADGI 56


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,810,331
Number of Sequences: 59808
Number of extensions: 405801
Number of successful extensions: 1011
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 933
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1010
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1608851125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)