Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120849.seq
         (639 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110478-6|CAE17957.2|  952|Caenorhabditis elegans Hypothetical ...    30   1.6  
AL033514-5|CAA22082.1|  773|Caenorhabditis elegans Hypothetical ...    30   1.6  
AF068717-3|AAC17762.2|  361|Caenorhabditis elegans Serpentine re...    30   1.6  
U21309-3|AAN73880.2|  143|Caenorhabditis elegans Hypothetical pr...    29   2.8  
Z81067-5|CAD92378.1|  965|Caenorhabditis elegans Hypothetical pr...    28   6.5  
AF106575-17|AAD56300.2|  333|Caenorhabditis elegans Serpentine r...    28   6.5  
AC006757-3|AAF60541.2|  916|Caenorhabditis elegans Hypothetical ...    28   6.5  
Z93390-5|CAJ76954.1|  219|Caenorhabditis elegans Hypothetical pr...    27   8.6  
Z93390-4|CAJ76953.1|  347|Caenorhabditis elegans Hypothetical pr...    27   8.6  
Z93390-3|CAB07676.1|  680|Caenorhabditis elegans Hypothetical pr...    27   8.6  
AF067950-1|AAG24154.1|  361|Caenorhabditis elegans Serpentine re...    27   8.6  

>AL110478-6|CAE17957.2|  952|Caenorhabditis elegans Hypothetical
            protein Y26D4A.14 protein.
          Length = 952

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 8/66 (12%)
 Frame = +2

Query: 296  NELKYPWNLI--TANSFIVSTDESRQSQYIYRTF------LLYNTVLTAILKQNNPFNVI 451
            N +K P N I   AN FIV T +     YIYR        + +N ++T++ K    F  I
Sbjct: 872  NYIKLPKNTIRENANFFIVFTQDKLNLDYIYRDHCGEIDKIKFNEMITSVWKDKYSFLTI 931

Query: 452  AENTSI 469
             + + I
Sbjct: 932  DKTSDI 937


>AL033514-5|CAA22082.1|  773|Caenorhabditis elegans Hypothetical
           protein Y75B8A.4 protein.
          Length = 773

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 11/32 (34%), Positives = 22/32 (68%)
 Frame = +3

Query: 102 KIIIDTVIKYIGKLADDEYILIADRMYVDLIY 197
           K+ I T+ KY+ + ++D Y++IA ++  D +Y
Sbjct: 32  KLNIQTIEKYLTRSSNDNYVVIAYKVSTDKVY 63


>AF068717-3|AAC17762.2|  361|Caenorhabditis elegans Serpentine
           receptor, class w protein142 protein.
          Length = 361

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 6/78 (7%)
 Frame = +2

Query: 287 DVCNELKYPWNLITANSFIVSTDESRQSQYIYRTFLLYNTVLTAILKQNNPFNVIAENTS 466
           D C + K+ WN+      I+  D S++S     T+LL++  L   L   NP     E  +
Sbjct: 100 DPCFQSKWYWNVFLDRILIMLKDHSQRSS----TWLLFSIALIRTLVIRNPMKTEYEKLT 155

Query: 467 ------ISIIVRNLGNCP 502
                 ++IIV +L  CP
Sbjct: 156 KPPTSFLAIIVVSLVFCP 173


>U21309-3|AAN73880.2|  143|Caenorhabditis elegans Hypothetical
           protein C13B9.1 protein.
          Length = 143

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -3

Query: 460 IFSNYIKWIVLFENCGQNCIVQKKSAI 380
           I+ N  KW+ L  NC +N I+Q K ++
Sbjct: 79  IYGNLKKWLELILNCYRNIIIQTKKSM 105


>Z81067-5|CAD92378.1|  965|Caenorhabditis elegans Hypothetical
           protein F23A7.7 protein.
          Length = 965

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -3

Query: 460 IFSNYIKWIVLFENCGQNCIVQKKSAI 380
           I+ N  KW+ L  NC  N I+Q K ++
Sbjct: 203 IYGNLKKWLELILNCYGNIIIQTKKSM 229


>AF106575-17|AAD56300.2|  333|Caenorhabditis elegans Serpentine
           receptor, class h protein5 protein.
          Length = 333

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 10/28 (35%), Positives = 21/28 (75%)
 Frame = -3

Query: 172 SAIKMYSSSASLPMYLMTVSMMIFKTPM 89
           S + + S+S S+P+Y++   ++IFK+P+
Sbjct: 15  STLHIISTSISVPIYIVAFWILIFKSPV 42


>AC006757-3|AAF60541.2|  916|Caenorhabditis elegans Hypothetical
            protein Y40C7B.1 protein.
          Length = 916

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 8/66 (12%)
 Frame = +2

Query: 296  NELKYPWNLI--TANSFIVSTDESRQSQYIYRTFL------LYNTVLTAILKQNNPFNVI 451
            N +K P N I   AN FIV T +     YIYR          +N ++T+I K    F  I
Sbjct: 836  NYIKLPKNTIRENANFFIVFTQDKLNLDYIYRDHCGEIDKSKFNEMVTSIWKVKYSFLTI 895

Query: 452  AENTSI 469
             + + I
Sbjct: 896  DKTSDI 901


>Z93390-5|CAJ76954.1|  219|Caenorhabditis elegans Hypothetical
           protein T23B5.1c protein.
          Length = 219

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +2

Query: 197 FRI*GHYFASERVHYQRR 250
           FRI GH F S+RVH+  R
Sbjct: 75  FRILGHLFYSDRVHFDAR 92


>Z93390-4|CAJ76953.1|  347|Caenorhabditis elegans Hypothetical
           protein T23B5.1b protein.
          Length = 347

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +2

Query: 197 FRI*GHYFASERVHYQRR 250
           FRI GH F S+RVH+  R
Sbjct: 203 FRILGHLFYSDRVHFDAR 220


>Z93390-3|CAB07676.1|  680|Caenorhabditis elegans Hypothetical
           protein T23B5.1a protein.
          Length = 680

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +2

Query: 197 FRI*GHYFASERVHYQRR 250
           FRI GH F S+RVH+  R
Sbjct: 536 FRILGHLFYSDRVHFDAR 553


>AF067950-1|AAG24154.1|  361|Caenorhabditis elegans Serpentine
           receptor, class w protein141 protein.
          Length = 361

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = +2

Query: 287 DVCNELKYPWNLITANSFIVSTDESRQSQYIYRTFLLYNTVLTAILKQNNP 439
           D C + K+ WN+      I+  D S++S     T+LL++  L   L   NP
Sbjct: 100 DPCFQSKWYWNVFLDRILIMLKDHSQRSS----TWLLFSIALIRTLVIRNP 146


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,809,882
Number of Sequences: 27780
Number of extensions: 309177
Number of successful extensions: 850
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 799
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 850
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)