Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120849.seq
         (639 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g63100.1 68416.m07087 glycine-rich protein                          31   0.65 
At1g01660.1 68414.m00084 U-box domain-containing protein               29   3.4  
At3g12910.1 68416.m01608 expressed protein                             27   7.9  

>At3g63100.1 68416.m07087 glycine-rich protein 
          Length = 199

 Score = 31.1 bits (67), Expect = 0.65
 Identities = 15/30 (50%), Positives = 17/30 (56%)
 Frame = +2

Query: 65  RRRGWRTQHGRFKDHHRYGHQVHWQTGRRR 154
           RR G   +HGR + HHR GH  H   G RR
Sbjct: 107 RRHGRDHRHGRDRGHHR-GHGHHHHRGHRR 135


>At1g01660.1 68414.m00084 U-box domain-containing protein
          Length = 568

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 15/64 (23%), Positives = 29/64 (45%)
 Frame = +2

Query: 92  GRFKDHHRYGHQVHWQTGRRRVHFDSGPHVCRFNLFRI*GHYFASERVHYQRRLPESDSE 271
           G   DHH        ++ + +  +   P  C   +F   GH   ++  + +  + E++SE
Sbjct: 114 GAASDHHYSEKMFDLKSRKAKYVYQHAPSSCEV-MFMCDGHLIYTKEANLEDCMGETESE 172

Query: 272 SGQS 283
           +GQS
Sbjct: 173 AGQS 176


>At3g12910.1 68416.m01608 expressed protein 
          Length = 160

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -3

Query: 574 AHDMVPGGMPARN*DRSTLLDLVVWTIAQI 485
           A+D +PGG    N   ++LL   VWT+ +I
Sbjct: 10  ANDTIPGGPTHSNPTPTSLLHAEVWTLCRI 39


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,632,205
Number of Sequences: 28952
Number of extensions: 274715
Number of successful extensions: 649
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 634
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 649
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1314848736
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)